Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1949 ATGGAAGAATCAAGATTCTGTGTAGACTTCATTTCCCCATTGTTCGCAGTCCCAGTGGATAATTGCTACTTATCTGCAGAAGCTAACATGGAGGAGGTTGAAGAAGCTAACAGAGCAGCTGTTGAAAGCTGTCATAGAGTCCTAAGTCTGTTGTCTCAGCGCCAGGATCAGGTTCCTTATGGCAAATTAATGGTGGAAACTGGCGAGGCTGTATCCAGGTTCAAGAAAGTTGTTTCCTTGCTCAATAATGGTGTGGGTCTTGCAAGAGTCAGGAAGGTCAAAAAACTTCAAATCCCTTTCCCTCAAAGTATTCTCTTGGACAATCCAAATTCCAAATCAAACCATTGTCACAAAAATCTGCTGTCTCTGCAACCTAGCTCTTCTGACAATTCAATTCAGGAGTTGGCCTCAAAAACTGGAAACTCACTGTCTCTGGGAAAGTCATCTCTGGAATTGAGTTCAAATGGCAAAAGTCCCCTACATCTTACCCCTCCAGCGTCATCGCAGCACTATCACTTACTTCAGCAGCAGCAGCAAAGAATATTGCTACAACAGCAACAAATGAAACACCAAACAGAAATGATGTTTCGAAAGAACAACAGTGGAATCAATCTGAATTTTGATGGCCCTAGCTGCACGCCCACAATGTCATCTACTAGGTCTTTCATTTCTTCCTTAAGCATAGATGGAAGCGTAGCTAACTTGGATGGGACTGGGAGTGCCTTCCATGTAATTGGAGCTCCACACTCTTCAGATCAGAATTCACAACACCATAAGAGAAAGTGTTCTGGCAGAGATGAAGGGAGTGGGAAATGTTGGAGCAGTACTAGGTGCCATTGCTCAAAGAAGAGAAAGCATAGAGTGAAGAGGTCAATCAAGGTGCCTGCAATTAGCAACAAGCTTGCTGATATACCCCCTGATGATTATTCATGGAGAAAATATGGGCAGAAACCAATCAAAGGCTCTCCTCATCCTAGAGGATACTACAAGTGCAGCAGCATGAGGGGGTGCCCTGCTAGGAAGCATGTGGAGAGGTGCTTGGAAGAGCCTTCAATGCTAATTGTAACATATGAAGGTGAGCACAACCACCCTAGAATATCAGCACAATCTGCAAATGCATGA 1122 0.4403 MEESRFCVDFISPLFAVPVDNCYLSAEANMEEVEEANRAAVESCHRVLSLLSQRQDQVPYGKLMVETGEAVSRFKKVVSLLNNGVGLARVRKVKKLQIPFPQSILLDNPNSKSNHCHKNLLSLQPSSSDNSIQELASKTGNSLSLGKSSLELSSNGKSPLHLTPPASSQHYHLLQQQQQRILLQQQQMKHQTEMMFRKNNSGINLNFDGPSCTPTMSSTRSFISSLSIDGSVANLDGTGSAFHVIGAPHSSDQNSQHHKRKCSGRDEGSGKCWSSTRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRISAQSANA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1949 373 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 31 370 IPR044810 GO:0003700
Lele13g1949 373 SMART WRKY_cls 305 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele13g1949 373 MobiDBLite consensus disorder prediction 248 271 - -
Lele13g1949 373 FunFam WRKY transcription factor 65 289 366 - -
Lele13g1949 373 Pfam Plant zinc cluster domain 259 303 IPR018872 -
Lele13g1949 373 Gene3D WRKY domain 289 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele13g1949 373 MobiDBLite consensus disorder prediction 253 267 - -
Lele13g1949 373 SUPERFAMILY WRKY DNA-binding domain 303 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele13g1949 373 MobiDBLite consensus disorder prediction 146 174 - -
Lele13g1949 373 ProSiteProfiles WRKY domain profile. 300 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele13g1949 373 Pfam WRKY DNA -binding domain 307 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele13g1949 373 Coils Coil 23 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1949 Lele-ChrLele13 27041687 27043661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1949 30 370 WRKY Transcription Factor Family AT2G30590 56.072 3.44e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele13g1949 WRKY 3.8e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1949 13 27041687 27043661 Lele15g0461 15 2673238 2677119 hybridization
Lele13g1949 13 27041687 27043661 Lele16g0483 16 2648221 2649958 hybridization