Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1948 ATGGCGGATGTTGAAGCAGCAGATGTCGCACCCGGACAGCCTAAGAAGAGGACATTCAAGAAGTTCAGTTTCAGAGGAGTCGATTTGGATGCGCTCCTGGACATGTCTACTGATGAGCTTGTCAAAATCTTCCCTGCTCGGGCGCGCAGAAGATTCCAACGCGGTCTGAAGCGAAAGCCCATGGCACTGATCAAGAAGCTGCGTAAAACGAAGCGGGAGGCTCCAGCTGGTGAGAAGCCGGAACCAGTAAGGACCCACCTCCGCAACATGATCATTGTACCTGAGATGATTGGTAGCATTATCGGTGTCTACAATGGCAAGACGTTCAATCAAGTTGAAATTAAACCAGAAATGATTGGTCACTATCTAGCCGAGTTCTCAATCTCTTACAAGCCTGTTAAGCATGGTAGGCCCGGTATTGGTGCTACTCACTCTTCTAGGTTCATTCCTCTCAAGTGA 459 0.4902 MADVEAADVAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKIFPARARRRFQRGLKRKPMALIKKLRKTKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1948 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele13g1948 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele13g1948 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele13g1948 152 TIGRFAM uS19_arch: ribosomal protein uS19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
Lele13g1948 152 SUPERFAMILY Ribosomal protein S19 56 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lele13g1948 152 FunFam 40S ribosomal protein S15 9 152 - -
Lele13g1948 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 9 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele13g1948 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele13g1948 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 12 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele13g1948 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele13g1948 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Lele13g1948 152 Gene3D 30s Ribosomal Protein S19; Chain A 10 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1948 Lele-ChrLele13 27038269 27040173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1948 1 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.842 1.75e-92 263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1948 13 27038269 27040173 Lele13g1948 13 27038269 27040173 ECH
Lele13g1948 13 27038269 27040173 Lele15g0462 15 2681078 2681971 hybridization
Lele13g1948 13 27038269 27040173 Lele16g0484 16 2650689 2654330 hybridization