Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1947 ATGGCTACGGAAGAGCCCGCAGTAGTTGTCGAGTCTGTACCAGAACCAGCTGTAGCCGAGCCAGCTGAGGAGAAAGAGGCCGCAGATGCTGGCGGTAAGACCAAGAAAGCTAAGGAGCCAAAGCCTAAGAAGGCTGTTGCTCCTAGATCTCGAACTGCGCATCCTCCCTACGAAGAGATGATCAAGGACGCGATTGTTACGCTGAAGGAGAGGACTGGTTCTAGCCAGTACGCGATTACCAAGTTCATCGAAGAGAAATACAAGCAGCTTCCGTCCAACTTTAGGAAGATTGTGTTACACCAATCAAAGAAGCTTGTGGCTGCCGGAAAGCTTGTTAAGGTCAAGGGCTCGTTCAAGCTTCCCTCTGCTAAGTCATCGGCACCAAAGGCATCTGGGAATTCCGCTCCAGCAAAGAAGCCTGCAGCTGCTAAGCCCAAGGCTAAACCAGCTGCCAAGTCAAAAGAGACAAAATCAATAAAGGTGGCAACTAAAGCGCGTCCTAAGCCTAAGGCAGTTGCCAAGGCAAAGCCTAAAGCGGCTGCCAAGCCGAAGGCAGCTCCCAAGCCCAAAGCCGCTGCGGCTAAGTCCAAAGCTGCCCCGGCAAAGCCTAAGGCCGCTGCCTCGAAGCCAAAAGCTGCTGCTAAGCCCAAGGCTGCCGCAAGACCAAAACCTAAGGAGAGACCAGCCAAGGCGTCGAGGACATCGACAAGGACATCCCCGGGCAAGAAGGCCCCGGCCCCTAAACCGGCACCAAAGAAGGCTGCGGCGACCAAGAAAGCTCCTGCTAAAGGCGTTAAGCCCAAGAGTGTGAAGTCTCCGGCAAAGAAGGCTTCGACAAAGAGAGGAAGGAAGTGA 855 0.5415 MATEEPAVVVESVPEPAVAEPAEEKEAADAGGKTKKAKEPKPKKAVAPRSRTAHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKYKQLPSNFRKIVLHQSKKLVAAGKLVKVKGSFKLPSAKSSAPKASGNSAPAKKPAAAKPKAKPAAKSKETKSIKVATKARPKPKAVAKAKPKAAAKPKAAPKPKAAAAKSKAAPAKPKAAASKPKAAAKPKAAARPKPKERPAKASRTSTRTSPGKKAPAPKPAPKKAAATKKAPAKGVKPKSVKSPAKKASTKRGRK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1947 284 SMART h15plus2 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele13g1947 284 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele13g1947 284 PRINTS Histone H5 signature 178 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele13g1947 284 PRINTS Histone H5 signature 144 158 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele13g1947 284 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele13g1947 284 PRINTS Histone H5 signature 200 219 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele13g1947 284 Gene3D - 49 128 IPR036388 -
Lele13g1947 284 MobiDBLite consensus disorder prediction 163 183 - -
Lele13g1947 284 MobiDBLite consensus disorder prediction 148 162 - -
Lele13g1947 284 CDD H15 52 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele13g1947 284 FunFam Histone H1 48 133 - -
Lele13g1947 284 Pfam linker histone H1 and H5 family 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele13g1947 284 MobiDBLite consensus disorder prediction 117 284 - -
Lele13g1947 284 MobiDBLite consensus disorder prediction 269 284 - -
Lele13g1947 284 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele13g1947 284 PANTHER HISTONE H1 25 259 - -
Lele13g1947 284 SUPERFAMILY "Winged helix" DNA-binding domain 51 130 IPR036390 -
Lele13g1947 284 MobiDBLite consensus disorder prediction 18 46 - -
Lele13g1947 284 MobiDBLite consensus disorder prediction 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1947 Lele-ChrLele13 27031752 27032704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1947 24 123 Single Myb Histone (SMH) Gene Family AT1G49950 31.000 9.04e-07 47.4