Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1940 ATGGCTGATAAATTATGCCCAAACGAAGAAGAGAAGGCTATGTTTGAATCTGTGCTGGGTGTGGCAGCCACTGCATTTTTTGTTTCGGCCGTTTCCAATAACGTTTTCTCCGACATAATTGTTCCATCTGGAGGTGACTTGGGTCTCCTTTCCAGGTTGTCCCAGGTTGTTGAAGTGTCCAAATGCACCTATGCCATCTTTTGGCAGGTGGTCGGCTTGAAATCTGGTGGCTCTGCGTTGGTTTGGGGTGATGGATTTTGTCGTGATCCCAAAGGGGGTGATCAGAATGGAGCTGGCCAAGAGGAGGCAAAACGCCGAGTGTTGCAGAAGCTTCGTGCCTGGTTTGGTGGGCCGAAAGAGTCTGATTCTGCAAAATCGGAGAGGGTCTCGGATATGGATATGTTTCACTCAACTTCAATGTATTATATATTTGGTTTTGATTCCCAGTATGGCCCTGGAAGTTCATTCAAGTCTGGTAAGTCGGTTTGGGCTTGGGACTTTTCTCATTGTCTGAACCAGTATGAATCGAGATCGTTTCTAGCAAACTTGGCTGGTTTTCAAACGGTTGCTTTTATACCTCTCAAGTCTGGGGTTATTGAGCTTGGTTCAAAAGAAGTGATGCCTGAAGATTTTAATATTTTGGAGATGGTTAGAACAACCTTTGGAGAACCTAATTCTGGACAGGCAAAGGTGTATCCCAAGATATTTGGACGTGAGCTAAGCCTTGGGGATGCAAAATCTCAGTCCATAACTATCAGTTTCTCCCCCAAGGTGGAAGATGATTCTGGTTTCACTTCAGACTCTTGTGAGGTACAAGCATTGGGGACTAACCATGTTTTTGGGAATTCTTCCAATGGGAGCATAGCCGATAGTACCGAAGCAAAATTGTTCCCCCAACTGAATCAAAAGATTGGTGGGAATTTCAATGCTCAAGCGAGGGTTTCTTGTTTGGAGCTCGGTAATGAAGACTTGTCACATCATCCAGATGAACGGAAGCCGAGGAAAAGAGGGAGGAAACCTGCCAATGGTAGGGAGGAACCCCTAAATCACGTTGAAGCAGAGAGACAGAGACGGGAGAAACTTAACCAGAGGTTTTATGCCTTAAGATCCGTTGTTCCTAACATTTCAAAAATGGACAAGGCATCTCTACTCGGTGATGCCATTACCTATATCACTGATCTGCAGATGAAGATCAAGGTGCTGGAAGCTGAGAAGGGTTTGATGAACAACAAGGACAAGCAGTTGGCATTGCCAGATATTGATTTTCAGGCCAGACAGGATGACACGGTTTTGAGCGTGAGCTGTCCATTGGATACCCATCCTGTTTCCGGGATTGTGAAGACTTTAAGAGAGCATCAAATTATACCTCAAGAGTCCATTGTTTCAACTGCTGATGATAAGGTCATCCACACATTCTCCATAAAAACTCATGGTGGGGAGAATGCTGCTGTACAGTTGAAGGAGAAGCTCGAAGCCTCCCTATTCAAAGACTGA 1494 0.4511 MADKLCPNEEEKAMFESVLGVAATAFFVSAVSNNVFSDIIVPSGGDLGLLSRLSQVVEVSKCTYAIFWQVVGLKSGGSALVWGDGFCRDPKGGDQNGAGQEEAKRRVLQKLRAWFGGPKESDSAKSERVSDMDMFHSTSMYYIFGFDSQYGPGSSFKSGKSVWAWDFSHCLNQYESRSFLANLAGFQTVAFIPLKSGVIELGSKEVMPEDFNILEMVRTTFGEPNSGQAKVYPKIFGRELSLGDAKSQSITISFSPKVEDDSGFTSDSCEVQALGTNHVFGNSSNGSIADSTEAKLFPQLNQKIGGNFNAQARVSCLELGNEDLSHHPDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAITYITDLQMKIKVLEAEKGLMNNKDKQLALPDIDFQARQDDTVLSVSCPLDTHPVSGIVKTLREHQIIPQESIVSTADDKVIHTFSIKTHGGENAAVQLKEKLEASLFKD 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1940 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 411 IPR036638 GO:0046983
Lele13g1940 497 FunFam Transcription factor bHLH13 338 412 - -
Lele13g1940 497 CDD bHLH_AtAIB_like 342 419 - -
Lele13g1940 497 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 221 IPR025610 -
Lele13g1940 497 Gene3D - 338 411 IPR036638 GO:0046983
Lele13g1940 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 394 IPR011598 GO:0046983
Lele13g1940 497 MobiDBLite consensus disorder prediction 321 356 - -
Lele13g1940 497 SMART finulus 351 400 IPR011598 GO:0046983
Lele13g1940 497 PANTHER MYC 45 493 IPR045084 GO:0003700|GO:0006355
Lele13g1940 497 Coils Coil 391 411 - -
Lele13g1940 497 Pfam Helix-loop-helix DNA-binding domain 349 395 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1940 Lele-ChrLele13 26991352 26992845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1940 1 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.606 3.42e-156 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele13g1940 bHLH-MYC_N 5.3e-36 CL0161