Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele13g1938 | ATGATTTGCAGATCACATCGTCCAACTGAAATTTGGGCATTTTGTTTCACTGACATTGACGTTGATTTCTGGGCCGAGCTTTGTGTTGAGAAAATGGAAGATGTTCAGGGTATTTCGGAAAACATTGTTGTTGGTTCTCACATTTGGGTTGGTGATCCAGAACAAGTTTGGATTGACGGAGAAGTACTGAAAATCAATGGAGAGGAAGTTGAGGTTCAAACTAGTTTTGGGAATAAGGTTGTTGGCTGTTTGTCAAAATTATATCCCAAGGATGCAGATGCTCCTGCTGATGGAGTTGATGATATGACCAAGCTTGCTTATTTGCATGAGCCAGCAACTTACACCGGAAATATTCTTATTGCTGTCAATCCCTTTCAAAATCTTCTGCACTTGTATAACACTGATGTGATGCAACAGTACAAGGGAGCTATGCTTGGAGATTTAAGCCCTCATGTATTTGCCATTGCTGAAGCTGCATACCGGGCAATGGTCAATGAGGAGAAAAGCAATGCTATTCTTGTTAGTGGTGAGAGTGGAGCTGGTAAGACAGAAACCACCAAAATGCTCATGCGTTATCTGGCATATTTGGGTGGCAATGCTGCAGCTGAAGGAAGTAGTGTTGAGCAACAAGTTTTAGAATCAAACCCAGTTCTTGAAGCATTTGGCAATGCAAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGAAAATTTGTTGAGATTCAATTCAATAAGCATGCAAAAATATCCGGCACGGCTATTAGAACGTATCTCCTAGAGAAATCTCGTGTTTGCCAAATCTCTGATCCAGAGCGTAACTATCACTGTTTTTACCTTCTCTGTGCAGCTCCGCCTGAGGAAAAGGAGAGATATAAGTTGGGAGATCCTAAATCATTTCACTACCTTAATCAATCCAGTTGCTATGAATTAGATGGTGTTAATGCTGCCCAGGAGTACTTGAGCACGAAGAGAGCCATGGATGATGCAATTTTCAGAGTTGTGGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGAAAAATCAGAAGAAGACTCGTCAGTTTTAGCAGATGAAGAATCAAAGTCCCATCTCGAAATGACAGCAGAACTTCTCAAGTGTGTTCCAAGTGCTTTGGAAGATGCACTTTGTAAGCGTATGATGATTACCCCAGAGGAAGTCATTAAGAGAAGTCTTGACCCTCTTGCTGCGACAGTTAGCAGGGATGGTTTAGCCAAGACATTATATTCTCGGTTATTTGACTGGTTAGTCAAAAAAATTAATGTCTCCATTGGGCAGGACCCCAGCTCAAAATGTATCATTGGAGTTCTTGACATATATGGCTTTGAAAGCTTTAAAACTAATAGTTTTGAGCAGTTTTGTATTAATTACACAAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATATACAAGGGAAGGGATTGATTGGAGCTACTTAGAATTCATAGATAATCAAGATGCATTGGATCTTATTGAAAAGAAACCAGGCGGAATCATTTCTCTGCTTGATGAGGCATGTATGTTTCCAAAGTCAACTCATGAAACATTTTCGCAAAAGCTTTATCAGACTTTCAAAAATAACAAGCGCTTCATCAAGCCAAAATTATCTCAATCAGATTTTACCATTGTTCATTATGCAGGGGAGGTTCAGTATCAGTCTGAGCAGTTTTTAGACAAAAACAAAGACTATGTTGTGCCTGAGCATCAAGACATGCTGAGTTCTTCCAAATGTTTTTTTGTATCAGGCCTTTTCCCCCCACTTTCTGAGGAGACGGCCAAATCTTCTAAATTTGCTTCTATCGGTGCTCGCTTTAAGTTACAATTACAACAACTGATGGATACTCTAAAATCCACAGAGCCCCACTATATTAGATGTGTGAAGCCAAATAATGAACTAAAATCTGCTGTGTTTGATAATACGAATGTCATCCAACAACTTCGATCCGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTTCCAACACACAGGACCTTCCGTGATTTTTTGACTCGAGTGGCTCTTCTTGCTCCAGAGATTGTCAAAGAAAAGTATGTGTACCTTAACTCAGGTTTTGTTTATATGAACTTTTTACCAAGCAGTCTTAATGTGACGCTAGATTCTGACATTTACTTGGTTTCTGGACTTGAAAACAATCCTCATATAAGCAACTGTGATGAGAAAGATTCATGTATAAAGATTTTGCAGAAGATTGGCCTTACAGGTTATCAGATTGGGGAATCAAAGATATTCTTGAGAGCTGGTCAGATGGCTGAGTTAGATGCTCGAAGGGCTCTCCTCCTTAACAACGCCGCTGTTGTTATCCAGAAACGGATCAAAACTCATCTAAATCAGAAAAGATATGTTACATTGCAAAAGTCTTCTGTCTGTGTGCAATCTTTTTGTAGAGGAGAAATGGCTCGGAGATCATATTATCACATGAAGAGAAATGCAGCTGCTGTCAGAATTCAAAGGAATATTCGGGGAAAACTAGCCAGGAAAAAGTACAACCAAATATATACTTCTGCCATTGTGTTGCAGACAGGCTTTCGAGCTATGGCAGTTCATGATGAATTGAGATATAGATCGGAAACTAGTGCATCAATTAAACTTCAGTTAGCAGATAGAGCAGTTGAAATGGAAAGCCAGGTTTTGGAGAAAGCAGCGGAAATGGAAAGCCAGGTGGTAGAGAGAGCAATAGAAATGGAAAGCCAGGCTGTGGAGAAAGCAGTGGAAAATGAAAGCCCTTGTGTGAAAGATTCCGTAAATCATTGTATAGATACTGAAAGCATTCATGCTATCAAAGAATCCTCAAGTTCTTTCCAAGACCCTGAAAAGATTGAGGCTCTTACTTCAGAAGTCATAAATTTGAAGGTTATGTTGCATGAAGAAAAACAAAGAGCTGATGATTGTGAAAGGAAATATGTGGAAGCCGAAGAATCTAGAGAGGAGTTACGCAAAAAGGTAGCAGAAACAGAAAAAAGAGTATATCAGCTTCAAGACTCATTGAATAGGATGATATCTTCCATGTCAGGCCAAGTTGCGGAACTGAAATTGATATTAAGTACTTCATCAAGATTAAGTTCAACTTTTCGGCCTATTGCTAGAGTTGATGTTGCTTCCAGCAACTCTGATACTTCATCCACAGATTCTGATTTCACAGCTTCAGCTCCTGCTTCAAATACAACTAACCAGTCTAACTCCCAGCCTAGTTCTATTCAGCTAGCTGTTCAGGGTGTCACTGTAGCGGATGGTTCAGGTCAGTCCAGTTTTGTTGTAAATGCCATTGTCCTAGATATTTTGCCATTTAATTTGCTTGCTGAATTCAGAAAACTATGCATATGTGGAAATCCTGTCTTGTATTCCTGA | 3420 | 0.3959 | MICRSHRPTEIWAFCFTDIDVDFWAELCVEKMEDVQGISENIVVGSHIWVGDPEQVWIDGEVLKINGEEVEVQTSFGNKVVGCLSKLYPKDADAPADGVDDMTKLAYLHEPATYTGNILIAVNPFQNLLHLYNTDVMQQYKGAMLGDLSPHVFAIAEAAYRAMVNEEKSNAILVSGESGAGKTETTKMLMRYLAYLGGNAAAEGSSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFNKHAKISGTAIRTYLLEKSRVCQISDPERNYHCFYLLCAAPPEEKERYKLGDPKSFHYLNQSSCYELDGVNAAQEYLSTKRAMDDAIFRVVAAILHLGNIKFEKSEEDSSVLADEESKSHLEMTAELLKCVPSALEDALCKRMMITPEEVIKRSLDPLAATVSRDGLAKTLYSRLFDWLVKKINVSIGQDPSSKCIIGVLDIYGFESFKTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYTREGIDWSYLEFIDNQDALDLIEKKPGGIISLLDEACMFPKSTHETFSQKLYQTFKNNKRFIKPKLSQSDFTIVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSSSKCFFVSGLFPPLSEETAKSSKFASIGARFKLQLQQLMDTLKSTEPHYIRCVKPNNELKSAVFDNTNVIQQLRSGGVLEAVRIKCAGFPTHRTFRDFLTRVALLAPEIVKEKYVYLNSGFVYMNFLPSSLNVTLDSDIYLVSGLENNPHISNCDEKDSCIKILQKIGLTGYQIGESKIFLRAGQMAELDARRALLLNNAAVVIQKRIKTHLNQKRYVTLQKSSVCVQSFCRGEMARRSYYHMKRNAAAVRIQRNIRGKLARKKYNQIYTSAIVLQTGFRAMAVHDELRYRSETSASIKLQLADRAVEMESQVLEKAAEMESQVVERAIEMESQAVEKAVENESPCVKDSVNHCIDTESIHAIKESSSSFQDPEKIEALTSEVINLKVMLHEEKQRADDCERKYVEAEESREELRKKVAETEKRVYQLQDSLNRMISSMSGQVAELKLILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTASAPASNTTNQSNSQPSSIQLAVQGVTVADGSGQSSFVVNAIVLDILPFNLLAEFRKLCICGNPVLYS | 1139 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele13g1938 | 1139 | Gene3D | Kinesin motor domain | 111 | 672 | IPR036961 | - | |
| Lele13g1938 | 1139 | Coils | Coil | 964 | 1019 | - | - | |
| Lele13g1938 | 1139 | Pfam | Myosin N-terminal SH3-like domain | 45 | 80 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 328 | 611 | - | - | |
| Lele13g1938 | 1139 | CDD | MYSc_Myo11 | 113 | 770 | IPR036018 | - | |
| Lele13g1938 | 1139 | Pfam | IQ calmodulin-binding motif | 835 | 853 | IPR000048 | GO:0005515 | |
| Lele13g1938 | 1139 | Pfam | IQ calmodulin-binding motif | 787 | 805 | IPR000048 | GO:0005515 | |
| Lele13g1938 | 1139 | Pfam | IQ calmodulin-binding motif | 810 | 828 | IPR000048 | GO:0005515 | |
| Lele13g1938 | 1139 | SMART | iq_5 | 784 | 806 | IPR000048 | GO:0005515 | |
| Lele13g1938 | 1139 | SMART | iq_5 | 832 | 854 | IPR000048 | GO:0005515 | |
| Lele13g1938 | 1139 | SMART | iq_5 | 807 | 829 | IPR000048 | GO:0005515 | |
| Lele13g1938 | 1139 | PANTHER | MYOSIN | 89 | 1080 | - | - | |
| Lele13g1938 | 1139 | FunFam | Class V myosin | 449 | 591 | - | - | |
| Lele13g1938 | 1139 | Gene3D | - | 272 | 327 | - | - | |
| Lele13g1938 | 1139 | PRINTS | Myosin heavy chain signature | 112 | 131 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | PRINTS | Myosin heavy chain signature | 169 | 194 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | PRINTS | Myosin heavy chain signature | 216 | 243 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | PRINTS | Myosin heavy chain signature | 439 | 467 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | PRINTS | Myosin heavy chain signature | 492 | 520 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | ProSiteProfiles | IQ motif profile. | 808 | 837 | IPR000048 | GO:0005515 | |
| Lele13g1938 | 1139 | Gene3D | - | 449 | 633 | - | - | |
| Lele13g1938 | 1139 | Pfam | Myosin head (motor domain) | 113 | 701 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | FunFam | Myosin heavy chain | 272 | 327 | - | - | |
| Lele13g1938 | 1139 | ProSiteProfiles | IQ motif profile. | 833 | 859 | IPR000048 | GO:0005515 | |
| Lele13g1938 | 1139 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 43 | 92 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | Gene3D | - | 835 | 887 | - | - | |
| Lele13g1938 | 1139 | Gene3D | - | 785 | 834 | - | - | |
| Lele13g1938 | 1139 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 92 | 834 | IPR027417 | - | |
| Lele13g1938 | 1139 | ProSiteProfiles | Myosin motor domain profile. | 113 | 782 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | SMART | MYSc_2a | 91 | 783 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele13g1938 | 1139 | MobiDBLite | consensus disorder prediction | 1057 | 1088 | - | - | |
| Lele13g1938 | 1139 | Gene3D | - | 676 | 783 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele13g1938 | Lele-ChrLele13 | 26963724 | 26976132 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele13g1938 | 37 | 1037 | Myosins gene family | AT1G08730 | 58.662 | 0.0 | 1238 |