Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1937 ATGAGTATAGCTATAAGTATTTATCTGTGGAGGGGGATTTCTAGGATCGGGCAGAAAGGAAATCCACTATTACTCAGTAAAAAGGTTAAAGCCTTGATGGAAGGAAACCATGTGAGAAGAGATCAGAAGCATCATGGAGAGGAAAACCTGAGCTTCGAGGAGCATTCATGGGCAAGTTCATGGCCGGCAAGAAACTACGCGTGTAGCTTCTGCAAGAGAGAGTTCAGGTCAGCTCAAGCTTTGGGTGGCCATATGAACGTGCACAGGAGAGATAGGGCAAGATTGAGATCAGGCATAATACCACCCTTGTGGCTTAATTCTGAATCTCTTAAACCTAACCCTATAACAACCTCTAAGCCACCTTCTAACCCAACTTCCTTGTCTGCTCATGAGCGTTTCGATAACGATTACTCACATCGCTCTGCAGTACTCCACCATGCCCCTTCTCTCACTTTGTCTTCTTCCCCGACCTCCTTTGCTTCTGCGAGTCATAAGAAACCACCAATGCTCGTCACGTCTTCTTCCAAGCTCCCTCTTCTGGGCCCTCAAAGCAGGGAAATGATCATGAGTGGTGACAACACGAGGAGTGAATTGAGATCAGTTAACGAGGAATTGAAGGGGTGTGCAAAGGAGAAAGGGCTTAAGGGTTTCGAGAACATTAAGGAGGATAACAGTAATAGTATCACGTTGGAGCTGGGTTTAGGGTTGCTTCAGAACCCAAAGGAGCAAATAGATTTGGAGCTTCGTCTCGGCCATTTCTAG 762 0.4633 MSIAISIYLWRGISRIGQKGNPLLLSKKVKALMEGNHVRRDQKHHGEENLSFEEHSWASSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSGIIPPLWLNSESLKPNPITTSKPPSNPTSLSAHERFDNDYSHRSAVLHHAPSLTLSSSPTSFASASHKKPPMLVTSSSKLPLLGPQSREMIMSGDNTRSELRSVNEELKGCAKEKGLKGFENIKEDNSNSITLELGLGLLQNPKEQIDLELRLGHF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1937 253 PANTHER OS07G0101800 PROTEIN 41 252 - -
Lele13g1937 253 Pfam C2H2-type zinc finger 66 90 - -
Lele13g1937 253 Gene3D Classic Zinc Finger 58 98 - -
Lele13g1937 253 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Lele13g1937 253 MobiDBLite consensus disorder prediction 154 177 - -
Lele13g1937 253 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lele13g1937 253 MobiDBLite consensus disorder prediction 110 129 - -
Lele13g1937 253 SMART c2h2final6 66 88 IPR013087 -
Lele13g1937 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1937 Lele-ChrLele13 26960200 26961279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1937 61 253 C2H2 Transcription Factor Family AT2G42410 39.691 5.38e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g1937 zf-C2H2_6 7.3e-07 CL0361