Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1936 ATGGAATTCATCAGAAACCCAGAAGAGTCCAGGAGCTCCAGCGACGAAACCGATAATACGACGGGGATTGGAAGATCCTATGAGTGTGTGTTTTGCAAGAGAGGCTTCACTACGGCACAAGCTTTAGGAGGACACATGAATATACATAGAAAGGATAGAGCCAAAACCAAGCCCAGTCTAGCTCCTTCATCTTCAAGCAAACTTTTGGATCTCGGTTTCTATTCTGCACGTCCTGGGAATTACTATTTAACACCTACTCCTGAGGTAGATAGTAATTACCCTCATCAATTTTATGATCCCAGTACAATCAGATCGTCTTCGCATGTACAGAGTGAAGATCGGGACGTGTTTGGACAAGATTGGAGGACCGGAAGCTTGAGCTTGTATACTAATCCATTCTGCGTACACGACAAGATACAAGACAATACACCAGAGGATGGGCTGGATTTGGAGCTTCGACTGGGTTATCAACCATAG 477 0.4465 MEFIRNPEESRSSSDETDNTTGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKTKPSLAPSSSSKLLDLGFYSARPGNYYLTPTPEVDSNYPHQFYDPSTIRSSSHVQSEDRDVFGQDWRTGSLSLYTNPFCVHDKIQDNTPEDGLDLELRLGYQP 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1936 158 SUPERFAMILY beta-beta-alpha zinc fingers 25 54 IPR036236 -
Lele13g1936 158 Pfam C2H2-type zinc finger 27 51 - -
Lele13g1936 158 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Lele13g1936 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Lele13g1936 158 PANTHER OS07G0101800 PROTEIN 12 157 - -
Lele13g1936 158 MobiDBLite consensus disorder prediction 1 20 - -
Lele13g1936 158 Gene3D Classic Zinc Finger 9 70 - -
Lele13g1936 158 MobiDBLite consensus disorder prediction 1 15 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1936 Lele-ChrLele13 26954650 26955126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1936 1 60 C2H2 Transcription Factor Family AT3G09290 50.000 9.43e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g1936 zf-C2H2_6 1.3e-05 CL0361