LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g1930	ATGGCCACGAACATACGTCAATTACTCAGAAGCATCTGTTTAAATACTGATTGGAAGTACGCCGTCTTTTGGAGCCTCAAACATGGGGGTCGGATGATCCTAACATGGGAGGATGGTTACTATGACAATCCTGATGATTATGATTCTTTAGATAATGAGTGCCGCCAGAAGACCATGGAACAGTTTCACAGTGGTATTGTTGGACAGGTAGCTCTCACTGGGAATCACCAGTGGATCTATGCAGATGATCATGCTACGAGTTCTGGTTTGCCCTTTGAGTTTGCTGATGGATGGCAATCTCAGTTTTCTGCTGGAATTAGGGTGTCGATTATCCCTTACGATGATATGCATAGCAGCTTTATTTTCAGATTTGTGATTGAAGATACGAGAACTCCAGATGTACCAACAACAACATTGTCTTCAGAAATTGGACCCGCTTGCTTACATGATACAGAGGAAACCACGAGGGGTGAAAAACTGGATATTTTAATGCCCTTTCCATCATGTTCTTCAAAGAACCTTCCATCTCCTTCTGTTTATCAGAAAATGGCTGTTGATGTGACCAAATATGGAGGGCCTGAGTTTCGCAGTGATGAAAGTTCGGTTTTGCTCAAGTCAGTATTAAATATGAGGGATGTGGAGCATCAGAAATTTGTAGATATGAGACCTCTAAATGAGAAGTTTGAAGGGAGCTCTGTAGGCCAATCTGAAAAAATTGGAGCTAGTTTGGGCTGCTCGCCTTCAGACTTTCATGAGGTTGTTTGTGAAGGTGATAAGTTGCGTTATTTAAATATTAGCCAGAAAGAGGCGTTGACACTTCCCAGATCTTCAGACGCAAGCTCCCAAAAAGTTACAGAAAAGTCAGAGTTTGAGGCTGCACCTTCTTACAACTGTACCTCAAATACATTGTTGAAATTCCCTGCTGGCTGTGAGCTTCATGAAGCCCTTGGACCAGCTTTTGTGAAAAGTGGATATTTTGATTCAGAGGGACATGTGAATGAGGATCTTACAATGATGGAGATGCCAGATAAAATTAGCCGTAGCCAGTTGACTCATGAACCTTGTCCGGAACATCTTTTGGAAGCAATAGTAGCCAATGTTTGCCATAGTAATAATGACATTAAGAGTGAACTGTCATACTCTGCATCAGTGCAGTCTGCAATGATATCTGAAAGAAATCCTGAAGCTTCCATGCACACTGCCCCTGCTATTAATTCAGAAGGCTATTCAATAGAGTCTTCTCTGGTAAGAGAGGACATATTCCACTCTTTGACTTCATCATCATGTCCTAGTTCATGTAGTGAACGGTTTGAAAGATCTTCTGAACCTGGTAAGAACAAGAAGAGGGCTAGGCCTGGGGAAAGCGGTAGGCCTAGGCCAAGGGACAGACAACTGATCCAAGATCGTATTAAGGAGTTGAGAGAATTGGTGCCAAATGGGGCAAAGTGTAGTATTGATTCACTACTGGAGCGCGCTATAAAGCACATGCTTTTTCTGCAGAGCATTACTAAGCATGCTGACAAGCTAAATAAATTTACTGGTTCAAAGACAAAGTTGCATCACTTGGAATCAGCTGTTGCTGGATCCTCTAGCTATGAACAGGGTTCGAGTTGGGTGATGGAAGTAGGCGGTCATTTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGTAAGAATGGACATATGCTTGTTGAGATGCTTTGTGAGGAGTGCAGCCATTTTCTGGAGATAGCAGAAGCCGTAAGGAGCTTGGGCCTGACAATTCTGAAAGGTGCGACAGAAGCTCATAGTGAGAAGACATGGATATGTTTTGTGGTTGAGGGCCAAAACAACAGAAATGTGCACAGAAAAGAAGAAAAACCAAAACTTTATCAAGATGTAAAATATAGAGGCTTTATAGCGAGAGACAGATGGCAGTTGTTTTACTTGGGTGCCGGGTGTGATTGTGACGATGATTTGCTAACGAGTTTGACACTAGAAATATCCCAATGCGTGGAATTAAGCATTTTAAAACTAGAACTATAA	2025	0.4198	MATNIRQLLRSICLNTDWKYAVFWSLKHGGRMILTWEDGYYDNPDDYDSLDNECRQKTMEQFHSGIVGQVALTGNHQWIYADDHATSSGLPFEFADGWQSQFSAGIRVSIIPYDDMHSSFIFRFVIEDTRTPDVPTTTLSSEIGPACLHDTEETTRGEKLDILMPFPSCSSKNLPSPSVYQKMAVDVTKYGGPEFRSDESSVLLKSVLNMRDVEHQKFVDMRPLNEKFEGSSVGQSEKIGASLGCSPSDFHEVVCEGDKLRYLNISQKEALTLPRSSDASSQKVTEKSEFEAAPSYNCTSNTLLKFPAGCELHEALGPAFVKSGYFDSEGHVNEDLTMMEMPDKISRSQLTHEPCPEHLLEAIVANVCHSNNDIKSELSYSASVQSAMISERNPEASMHTAPAINSEGYSIESSLVREDIFHSLTSSSCPSSCSERFERSSEPGKNKKRARPGESGRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLNKFTGSKTKLHHLESAVAGSSSYEQGSSWVMEVGGHLKVHSILVENLSKNGHMLVEMLCEECSHFLEIAEAVRSLGLTILKGATEAHSEKTWICFVVEGQNNRNVHRKEEKPKLYQDVKYRGFIARDRWQLFYLGAGCDCDDDLLTSLTLEISQCVELSILKLEL	674

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g1930	674	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	450	499	IPR011598	GO:0046983
	Lele13g1930	674	MobiDBLite	consensus disorder prediction	425	463	-	-
	Lele13g1930	674	MobiDBLite	consensus disorder prediction	438	463	-	-
	Lele13g1930	674	Pfam	bHLH-MYC and R2R3-MYB transcription factors N-terminal	6	57	IPR025610	-
	Lele13g1930	674	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	463	505	IPR036638	GO:0046983
	Lele13g1930	674	PANTHER	TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED	264	617	IPR043561	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g1930	Lele-ChrLele13	26912682	26917817	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g1930	1	607	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G31280	36.287	1.43e-109	346

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele06g1260	06	8020091	8022201	Lele13g1930	13	26912682	26917817	CCT
	Lele07g1463	07	8898844	8901898	Lele13g1930	13	26912682	26917817	CCT
	Lele08g1252	08	7959544	7961669	Lele13g1930	13	26912682	26917817	CCT
	Lele05g1398	05	8832877	8838981	Lele13g1930	13	26912682	26917817	CCT
	Lele13g1930	13	26912682	26917817	Lele15g0478	15	2795530	2802434	hybridization
	Lele13g1930	13	26912682	26917817	Lele16g0498	16	2756650	2761452	hybridization

Showing 1 to 6 of 6 entries