Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1927 ATGGCTACCTCGGACTCTGCTTTACCCGTATTCGCCATCCTTGTCCTCAGCATCCTGGCCACGGCTTTCTTGCTCATCGGCTACTTCACTTTCGTCACCAAATGCTGCTCTTACTGGCACCACCTCAACCCTCTCACATGGCTCTCCATTCTGCGTCCCAGACACAGCGAAGAACCCTTCATAGCTCTCTCACCCACCATGTGGAATCGCGGCCTTGATGACTCCATCATCCGAGAAATACCCACATTCCAGTTCGTCAAAGGTGAGGACCATGACGGTAGTTTGAGCACTGTGTATGGTTGTGTGGTGTGTTTGAGTGAGTTTCAGCAACAGGACATGCTCAAAGTTCTACCCAAATGCGGCCACGCTTTTCATTTGGACTGTATCGATATTTGGCTTCAGAGCAACGCCAATTGTCCTCTTTGCAGATCAAGCATTTCTGGCACCACGCGTCCTCCATTGGACCATATCATAGCACCGAGCTCTTCTCCTCAGGATTCTCAGTTACTCTCCAATGTGGCCAGTGATGAAGACTTCGTGGTCATTGAATTGGGGGGAGAAGATGGCGGATCACTATCACTGAGGCGACATGAACGGAATCAGTTGAGCGGGGGAAGCTTGGCACAGAGTACAAGTCACTGTACGAGGAAGATGAAATCGAGGAAGTGGCAGCGTGTGTCCATCATGGGAGATGAGTGTATTGATACGAGGAAGAAAGATGAACAGTTCTGTATTCAGCCCCTTAGGAGATCTTTCTCCATGGATTCCGCAAATGATAGGCAAGTTTACGTGGAAGTTCGAGCCATTACGCAGCAGCCAAACAGGCATCAAAGCGAGGCTAGTGGGAGTGAAGACAGTAACAGTAACAGCAGAGGTCGAAGGTCTTTCTTTCCATTTCGTTACGGTCGTGGATCCAGAAACGCAGTGCTTCCTCTGGAGAATGAGTCGGACGGTGGAATAGAGGCATTGCTTTTAGTGTCATATTGCTTAGATTTGAAGGTGTATGTCTTCATTCACAATGAATGCGAATGA 1032 0.4893 MATSDSALPVFAILVLSILATAFLLIGYFTFVTKCCSYWHHLNPLTWLSILRPRHSEEPFIALSPTMWNRGLDDSIIREIPTFQFVKGEDHDGSLSTVYGCVVCLSEFQQQDMLKVLPKCGHAFHLDCIDIWLQSNANCPLCRSSISGTTRPPLDHIIAPSSSPQDSQLLSNVASDEDFVVIELGGEDGGSLSLRRHERNQLSGGSLAQSTSHCTRKMKSRKWQRVSIMGDECIDTRKKDEQFCIQPLRRSFSMDSANDRQVYVEVRAITQQPNRHQSEASGSEDSNSNSRGRRSFFPFRYGRGSRNAVLPLENESDGGIEALLLVSYCLDLKVYVFIHNECE 343
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1927 343 SMART ring_2 101 142 IPR001841 -
Lele13g1927 343 Pfam Ring finger domain 101 143 IPR001841 -
Lele13g1927 343 SUPERFAMILY RING/U-box 100 147 - -
Lele13g1927 343 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lele13g1927 343 FunFam E3 ubiquitin-protein ligase ATL6 62 149 - -
Lele13g1927 343 PANTHER RING-H2 FINGER PROTEIN ATL16 4 313 IPR044600 GO:0016567|GO:0016740
Lele13g1927 343 MobiDBLite consensus disorder prediction 271 293 - -
Lele13g1927 343 CDD RING-H2_PA-TM-RING 101 143 - -
Lele13g1927 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 148 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele13g1927 Lele-ChrLele13 26898974 26900145 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1927 2 276 C3H Transcription Factor Family AT1G04360 43.689 5.14e-72 226