Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1926 ATGGATTCCCTTCATCAGTTCCAAAACCAAGAGCTATCATCATCATCCCCTACAAATTCCAATTCCTCTGTTTCCGAAGAATCATTCAGCTGGGAAGACTTCTTCACCTTCGATTCTGTGGCAGCAATAGAATCTCAAGAAGTCTCCTCACCAGTGGAAGTGGCGACAAACACGGACGCGTACTCATCTATATCATCATCACCACCAGAACACCAGAGTAGTGGGAGTAAGAAAGGGAAGAGGCCGTACAGAGGTGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCGATGAGGAATGGGGTGAGAGTGTGGATCGGGACGTTTGATACGGCGGAGGCGGCGGCATTGGCCTACGACCAGGCAGCTTTCTGCATGAAGGGATCGATGGCGGTGCTGAATTTCCCGGAACAAGTGGTGAGGGAGTCCCTCGAAAGCATGGCGAGTAAGCCGTGGGAGGAAGGTTTGTCTCCTGTGTTGGCCCTCAAGAGAAAGCACACCTTGAGACAGAGGTCGTCGTCGTCCTCTAACCTTAAAAAACCCAGAGAGAATATTACCAGCTCCTCCAGGGACACCCATGCCTCCCACAACGTGCTCGTGTTGGAGGATTTGGGGGCTGAATATTTGGAGCATCTCTTGAGCTTGACCTCTTCCGAGTTCGCTTCATAG 681 0.5213 MDSLHQFQNQELSSSSPTNSNSSVSEESFSWEDFFTFDSVAAIESQEVSSPVEVATNTDAYSSISSSPPEHQSSGSKKGKRPYRGVRRRPWGKFAAEIRDSMRNGVRVWIGTFDTAEAAALAYDQAAFCMKGSMAVLNFPEQVVRESLESMASKPWEEGLSPVLALKRKHTLRQRSSSSSNLKKPRENITSSSRDTHASHNVLVLEDLGAEYLEHLLSLTSSEFAS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1926 226 CDD AP2 83 142 IPR001471 GO:0003700|GO:0006355
Lele13g1926 226 MobiDBLite consensus disorder prediction 172 195 - -
Lele13g1926 226 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
Lele13g1926 226 MobiDBLite consensus disorder prediction 1 25 - -
Lele13g1926 226 FunFam Ethylene-responsive transcription factor 2 81 141 - -
Lele13g1926 226 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Lele13g1926 226 PANTHER DNA-BINDING DOMAIN 28 218 IPR044808 GO:0003700|GO:0009873
Lele13g1926 226 MobiDBLite consensus disorder prediction 59 85 - -
Lele13g1926 226 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Lele13g1926 226 MobiDBLite consensus disorder prediction 59 73 - -
Lele13g1926 226 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Lele13g1926 226 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Lele13g1926 226 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Lele13g1926 226 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1926 Lele-ChrLele13 26887795 26888475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1926 32 217 AP2-EREBP Transcription Factor Family AT2G31230 47.805 1.25e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g1926 AP2 1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1926 13 26887795 26888475 Lele05g1399 05 8840747 8842963 CCT
Lele13g1926 13 26887795 26888475 Lele06g1260 06 8020091 8022201 CCT
Lele13g1926 13 26887795 26888475 Lele07g1463 07 8898844 8901898 CCT
Lele13g1926 13 26887795 26888475 Lele08g1252 08 7959544 7961669 CCT