Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1918 ATGCCGTCCCTGATTTCTCCTGGGAAAATCCATCGGTTGGAGATGGAAAATTTCAAGTCTTACAAGGGTCTTCAAGTCATTGGCCCCTTCTACGACTTCACCGCAATTATTGGCCCCAATGGTGCTGGTAAGTCCAACCTTATGGACGCCATTAGCTTTGTGCTTGGTGTGAGGACAGGTCAGCTGCGTGGTGCTCAACTCAAAGACTTAATCTATGCGTACGACGACAAGGAAAAGGAGCAGAAGGGACGAAAGGCGTTCGTTCGTTTGGTTTATCAGCTGGTCAATGGGTCGGAGATCCAGTTCACTAGGACTATCACGAGCGCCGGTGCGAGCGAGTACCGGATTGATGGGAGCCTTGTAACATGGGATGCGTATAATGCTAGACTAAAGTCACTTGGCATTCTTGTCAAGGCTCGCAATTTCCTCGTGTTTCAGGGTGATGTGGAATCCATTGCATCGAAAAATCCGAAAGAGCTTACTGCCCTTTTTGAGCAGATATCTGGCTCTGACGAGCTCAAGAGAGACTATGAACGATTTGAAGAAGAAAAAGCCACAGCTGAAGAAAAATCAGCCCTTGTTTATCAGAAGAAGAAGACTGTAGTTATGGAGAGGAAGCAGAAGAAGGAGCAAAAGGAAGAAGCAGAGAAACATATTCGTTTGCAGGATCAACTGAGAACTATAAAGAAAGAGCATTTCTTGTGGCAATTGTTCCATATAGAAAGAGATATTGAAAAGACGACTGATGATCTTGACGATGAGAAAAGAAGTCGTGAAGGTGTCATGGAAGAACTGGAAAAATTTGAAGCCGAAGCTAGTAAAAAGAAGAAAGAACAGGCAAAATATCAGAAAGAGATTGCACAATGCGAAAAGAGAATTGGTGAGAAAAGCAACAAACTTGACAGGAATCAACCTGATCTTCTGAAGTTGAAAGAGGAAATGGCTCGTATTAACTCAAAAATAAAAAAAGGGAAGAAGGAGCTAGACAGAAAAAGGGAAGAACGGAGAAAACATGCTCATGATATAACAGAGCTACAGAGGGGTATACGAGATCTCACTGCCAAATTGGAAGATCTACAGGAAAAGAGTCGAGATGTTGGTGAAGAACTAAAGTTAGATGGCCGTGACTTGGAAGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTAAGGGAGGAGAAAGAACTTCTGGATAGGCAACAACATGCAGATAGTGAAGCTCAAAAGAATTTGGATGAAAATCTTCAACAATTAAGGAATAGGGAGTCTGAATTGAATTCACAAGAAGAACAGATGCGGACTAGGCTGAAAAAAATTCTTGATAATTCTAAAAAACATAAGGATGACCGTGCAAATTTGAAAAAGGAATTGCGTGTGATGCAGGACAAACATCGAGATTCCAGGAAGAAATATGAAAATTTGAAGTTGAAAATTGGTGAAATAGAAAATCAACTTCGTGAACTGAGGGCTGATCGATATGAAAATGAGAGAGACGCAAAACTGTCTCAAGCTGTGGAGAGCCTCAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTTATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCCATGGGTAAATTTATGGATGCGGTTGTAGTTGAGGATGAAAAGACTGGAAAGGAGTGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCTCAGACATTTATTCCTTTGCAATCAGTTCGTGTGAAGCCAATTATTGAAAGATTGCGCACATTAGGTGGCACAGCAAAGCTTGTTTTTGATTGCAAGTTTGATCCTGCCTTGGAGAAGGCAATTCTCTTTGCCGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAAGCCAAAGTTTTGAGCTGGACTGGTGAGAGGTTCAAAGTTGTAACTGTGGATGGAGTTCTGCTGACAAAATCTGGAACAATGACTGGTGGCACTAGTGGCGGAATGGAGGCGAGGTCAAAACAGTGGGATGACAAAAAGATTGAAGGCCTTAAGAAAAAGAAAGAGCAGTATGAGTTGGAGTTGGAAGAGGTAGGATCAATAAGAGATATGCACCTTAAGGAGTCTGAAGCCTCTGGAAAAATTAGCGGACTTGAAAAGAAAATTCACTATGATGAGATTGAGGAGCAAAGCATTAAAGACAAGCTTTCAAATTTGAAGCGAGAGAAAGAGATCATCAAAGAAGAAATCAAACGGATCAGTCCAGAACTTCAGAAGTTAAATGGCACTGTTGATAAGAGGAATGCAGACATACGTAAGCTGGAGAAGAGGATCAATGAAATTACTGATAGGATTTACAAAGATTTCAGCAAGTCGGTTGGGGTTGCTAACATTCGTGAGTATGAAGAAAATCAACTAAAGTCTGCTCAAAATGTAGCTGAGGAGAGGCTAAGCTTGAGCAGCCAGCTGTCAAAATTAAAATATCAGTTGGAGTATGAACAAAATCGGGATATGACTACACGAATTAGAGAACTGGAATCTTCTTTGGGGGCTCTTGAACATGATCTAAAACAGGTACAGCACAAAGAGGCTGAAACAAAGTTGTCAGCTGAGAAAGCTACTCAAGACATTGACCAGTTGAAGGAGGAAGTTCAGGAGTGGAAATCGAAGTCAGAAGATTGTGAGAAGGATATCCAAGAGTGGAAGAAGCGTGCTTCTTCAGCCACAACAAGCATATCTAAACTTAATCGTCAGATAAACTCGAAGGAGGCCCAGATTGAGCAGTTCATTGTGCAGAAGCAAGAAATTGTAGAAAAGTGTGAACTAGAACAATTTAGCCTGCCAATTATAGAAGATCCAATGGATACTGATACTTCAATACCAGGTCCAGTTTTTGACTTTGGTGAACTAAGTAGAGCACTGAAGGATAGGAAGAACTCTGACAGGGACAAAATTGAGGTTGACTTTAAGCAAAGAATGGATGCCCTGACATCTGAAATTGAAAGAACAGCACCGAATTTGAAGGCATTAGATCAATATGAGGCACTGCTGGAAAAGGAAAGAGCAGTAACTGAAGAGTTTGAAGCCGTCAGGAAAGAGGAGAAGGAGAAGGCTGATAGGTTCAATGCAGTTAAGCAGAAGAGGTATGAATTGTTCATGGATGCTTTCAACCACATATCCGGTAATATAGATAAAATATACAAGCAACTTACAAAGAGCAGCACACATCCGCTGGGTGGAACAGCATACTTAAACTTGGAAAATGAAGATGATCCATTTCTGCATGGCATCAAGTACACTGCAATGCCCCCAACAAAGCGCTTTCGTGATATGGAGCAGCTGTCTGGTGGGGAGAAGACTGTTGCTGCACTTGCTTTGCTATTCTCCATCCACAGTTACAAGCCTTCACCTTTTTTCATATTGGACGAAGTTGATGCTGCATTGGACAACTTAAATGTTGCAAAGGTTGCTGGATTTATTCGTTCAAAATCTTGTGCGGGAGCTAGGGCTAGTCAAGATGCTGATGGTGGCAGTGGCTTTCAAAGTATTGTGATATCGTTGAAAGATAGCTTTTATGACAAAGCTGAAGCATTGGTTGGGGTTTACCGTGACTCTGAGAGAAGCTGTTCGAGAACTCTGACATTTGACCTGACCAAATACCGAGAGTCCTAA 3651 0.4174 MPSLISPGKIHRLEMENFKSYKGLQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDKEKEQKGRKAFVRLVYQLVNGSEIQFTRTITSAGASEYRIDGSLVTWDAYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALFEQISGSDELKRDYERFEEEKATAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHIRLQDQLRTIKKEHFLWQLFHIERDIEKTTDDLDDEKRSREGVMEELEKFEAEASKKKKEQAKYQKEIAQCEKRIGEKSNKLDRNQPDLLKLKEEMARINSKIKKGKKELDRKREERRKHAHDITELQRGIRDLTAKLEDLQEKSRDVGEELKLDGRDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNLDENLQQLRNRESELNSQEEQMRTRLKKILDNSKKHKDDRANLKKELRVMQDKHRDSRKKYENLKLKIGEIENQLRELRADRYENERDAKLSQAVESLKRLFQGVHGRMTYLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGTAKLVFDCKFDPALEKAILFAVGNTLVCDDLEEAKVLSWTGERFKVVTVDGVLLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKKKKEQYELELEEVGSIRDMHLKESEASGKISGLEKKIHYDEIEEQSIKDKLSNLKREKEIIKEEIKRISPELQKLNGTVDKRNADIRKLEKRINEITDRIYKDFSKSVGVANIREYEENQLKSAQNVAEERLSLSSQLSKLKYQLEYEQNRDMTTRIRELESSLGALEHDLKQVQHKEAETKLSAEKATQDIDQLKEEVQEWKSKSEDCEKDIQEWKKRASSATTSISKLNRQINSKEAQIEQFIVQKQEIVEKCELEQFSLPIIEDPMDTDTSIPGPVFDFGELSRALKDRKNSDRDKIEVDFKQRMDALTSEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKADRFNAVKQKRYELFMDAFNHISGNIDKIYKQLTKSSTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCAGARASQDADGGSGFQSIVISLKDSFYDKAEALVGVYRDSERSCSRTLTFDLTKYRES 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1918 1216 Coils Coil 307 334 - -
Lele13g1918 1216 Coils Coil 244 299 - -
Lele13g1918 1216 Coils Coil 198 225 - -
Lele13g1918 1216 Gene3D - 8 222 IPR027417 -
Lele13g1918 1216 Gene3D - 944 1215 IPR027417 -
Lele13g1918 1216 Gene3D - 496 577 - -
Lele13g1918 1216 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
Lele13g1918 1216 PIRSF SMC 8 1212 IPR024704 GO:0005524|GO:0016887
Lele13g1918 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1157 IPR027417 -
Lele13g1918 1216 Coils Coil 170 190 - -
Lele13g1918 1216 Coils Coil 1006 1026 - -
Lele13g1918 1216 Coils Coil 828 925 - -
Lele13g1918 1216 SUPERFAMILY Smc hinge domain 481 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele13g1918 1216 CDD ABC_SMC1_euk 1095 1210 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Lele13g1918 1216 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Lele13g1918 1216 Coils Coil 722 742 - -
Lele13g1918 1216 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Lele13g1918 1216 Gene3D - 578 659 - -
Lele13g1918 1216 Coils Coil 674 694 - -
Lele13g1918 1216 Coils Coil 750 777 - -
Lele13g1918 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 861 1207 IPR027417 -
Lele13g1918 1216 Coils Coil 412 502 - -
Lele13g1918 1216 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele13g1918 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1216 - -
Lele13g1918 1216 Pfam SMC proteins Flexible Hinge Domain 517 630 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele13g1918 1216 Coils Coil 342 369 - -
Lele13g1918 1216 Gene3D - 232 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1918 Lele-ChrLele13 26846591 26858234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1918 8 112 Structural Maintenance of Chromosomes family AT5G61460 34.821 9.66e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1918 13 26846591 26858234 Lele16g0511 16 2808934 2813312 hybridization