Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1912 ATGGAGGAAGACGAAGACAGAATTTTGCTTAGTAGTTTGGGCGTAGAGTCTGCCAATCACGAATGGGTTGAAAGAGACATATTAGCTGAGGCACAGAATGATGTGGTGACCATTACTGAAGCTGATGGGAGCTCAAAGGAAGAATCTCCTCAGAAATATAAAAATGTTGACCCATCATCTATTAGCAAAGCAGAACTTTATCATAAGTTGAGGGCAGTAGATTTTGAAATAAATGCAGTTGCTTCCACTATCCAACAAGTGAGAAATGTTGAGAGTAATGGAGATTGTATTGATGGGGGTGCTGACAACGGGGAGAAAAGGACTACCAAGGATACTTCCTCCAATGATTTGAATCTTCAACATGTTCTGGCTGCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTAGAGAAAGAGCTTTCAGATTTGTTCAAGGAGAAGCCTTGCAAAAGTATTGATCGGGAGAAGGAGAATGAGATCTTTAATTTGGTTAAGGAAGAGCGAAGACCCAAGAGGAAGCCTAAAGAAGTTAAAAGTTTACCGAAAGGCTCAGACTCAGGGAAACGGCATAAAGCAGTTTCATTTAATGATGATGTTGATTTTGATGCAGTTTTAGATGCTGCCTCGGCAGGCTTTGTTGAGACAGAAAGGGATCACTTGGTAAGGAAAGGGATTTTGACACCATTTTCTAACCTGAAGGGCTTTGAGCGACGCTTTCAACAATCAGAAACATCTAGTAGTTATCGTGCGAGTCAAGAAGAAAGGACTGATGATCTTGCTTCTTCTAGTCTTGAAAGAGCTGCCCAATCAATATCTGAGGCCGCAAGAGCTCGCCCAACCACCAAGTTGCTTGAATATGAAAATCTGCCTAAGCTTGACGCACCCTCTCATCCTTTTATCAGACTCAAAGTACCACTAAAACTTCCTCAGTCCCGAGAAAGAGAGCTAGAGAAGAAAAATAATTTGAAAAGGCAAAAAAGGCGACCTTTGCCTGGCAGGAAATGGACAAAGCGTGTTTCTAGTGAGGAAATACATTCAAGAGAGACCGAGGAAGCAAGTGGTTGCCTGGACTCTTCCAGTTGTGAAAATACAGATGCTCAGGATTTTGAATGTGCTGATCATGAACCTTCTTTTATAACATTAGAAGGTGGGCTGAAAATCCCTGATAATATTTTTGATGCACTATTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGGGATGAGATGGGTCTTGGTAAAACCATCCAGGTTTTATCTTTTCTTGGTGCATTGCATTTTAGTGGCATGTATAAACCAAGCATTATCATTTGTCCTGTGACCCTCTTGCGACAGTGGAAAAGGGAAGTTCGAAAGTGGTACCCAAAGTTTCATGTAGAGCTTTTACATGATTCTGCACGAGATTCTGATGTTAGAAAGGAGCAATCCAAATGTGATGAATCAGACTGTGATAGTAATAGTTCAAGTGACAGTGACTACGAGACCAATATTCAATCAAAAAGCACAAGAAAATGGGAATCCCTGATAAGTCGTGTAATGAGAGCGGATTCTGGATTGCTTATCACAACATATGAGCAGCTCAGAATATTGAGGGACCTGTTACTTGACATTGAATGGGGTTACGCAGTTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAATTACCCTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGCTCACCTATACAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCCGAGTTTGCTGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATATAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATCTTCTTCGGCGGATGAAAGCAGATGTGGATGCCCAGCTTCCAAAGAAAACTGAGCATGTTTTATTTTGTAGCCTTACTTCTGAGCAAGTATCTGCTTATAGAGCATTTTTGGCAAGCTCTGAAGTGGAGCAAATCTTGGATGGACGGAAGAATTCTCTTTATGGAATTGATATAATGCGTAAGATTTGCAACCACCCTGACTTGCTTGAAAGGGAACATGCATTCAGCAATCCAGACTATGGAAATCCAGAACGCAGTGGGAAAATGAAAGTTGTGGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTTCTGTTTACTCAAACCCAACAAATGCTTGACATTATTGAGAATTTTTTGACCATTTCTGGTCATAATTACCGGAGAATGGATGGAGCCACTCCCATAAAACAAAGGATGGCTTTAATTGATGAATTTAATGAGTCAAGGGAAGTATTTATATTCATTTTAACAACCAGAGTTGGGGGCTTGGGGACGAATCTTCCTGGTGCAAACAGGGTGATTATCTTTGACCCTGACTGGAATCCTTCAACTGACGTTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACGGGATGTGACAGTATATAGGTTGATCACTCGCGGAACTATAGAGGAGAAAGTTTATCACCGTCAGATTTACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAGAGATTCTTTAAAGCTCGAGATATGAAAGATCTTTTTATTCTGAATGTGGATAACAAAAGTGGGTCAACTGAAACGTCAACTATTTTCAGTCAAATATCTGAAGATGTAAATATTGTTGGGGCACATGAAGATAAGCAGGATAAGCATAAACATCCCCAAAATTCTGAATCAGGTTCTGATGATGTTGTAGTTAATAATGATGGCAGGCCAAAAACAAGATCAGTCAAGGGAAAGGGAAAAGAGAAAACAGATCGTCTTGATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCCATGGGTTACATAGTGCTGTGAACCATGATTTGATCATGAATGCCAATGGGGAGGAAAAGATGAGGCTTGAGGAGCAAGCTTCCCAGGTGGCACAGAGAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTCCGAAGTCGTGAAAGCATTGCTGTTCCTACATGGACAGGAAAGTCAGGAACTGCTGGTGCACCATCATCTTTTCGTCGAAAGTTTGGTTCAACCGTGAATTCCCAGTTGGTAAGTAATTGCAAAGAATCTGATGAATCAGCTGGTGATGGGACTAGAAGATTAAATGGATCAGCTGCTGGGGCATCATCTGGTAAGGCGTTATCTTCTGCTGAACTTTTGGCTCGAATCCGGCATAGCGAAGAAAAAGCCATTGGTGCTGGGCTAGAACATCAGTTTGGTAGGGCTGTTGACCTATACAATCAAGCAAGATCTGTCGATGTTGGATCCTCTAGGGCGTCTAAAAAGGTAGATGGAGTGCAACCTGAGGTATTGATTCGGGAAATCTGTACATTTCTACAACAGAGAGGTGGACGTTCTGATTCATCCAGCATAGTCCAGCATTTTAAGGACAGGATACCCTCGACAAATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGGAAAAAGGATCAAATGGATCACATTGGATTCTGAAGCCAGACTATCAAGAATAA 3687 0.4147 MEEDEDRILLSSLGVESANHEWVERDILAEAQNDVVTITEADGSSKEESPQKYKNVDPSSISKAELYHKLRAVDFEINAVASTIQQVRNVESNGDCIDGGADNGEKRTTKDTSSNDLNLQHVLAADRLESLKKTKAQLEKELSDLFKEKPCKSIDREKENEIFNLVKEERRPKRKPKEVKSLPKGSDSGKRHKAVSFNDDVDFDAVLDAASAGFVETERDHLVRKGILTPFSNLKGFERRFQQSETSSSYRASQEERTDDLASSSLERAAQSISEAARARPTTKLLEYENLPKLDAPSHPFIRLKVPLKLPQSRERELEKKNNLKRQKRRPLPGRKWTKRVSSEEIHSRETEEASGCLDSSSCENTDAQDFECADHEPSFITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREVRKWYPKFHVELLHDSARDSDVRKEQSKCDESDCDSNSSSDSDYETNIQSKSTRKWESLISRVMRADSGLLITTYEQLRILRDLLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVDAQLPKKTEHVLFCSLTSEQVSAYRAFLASSEVEQILDGRKNSLYGIDIMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIENFLTISGHNYRRMDGATPIKQRMALIDEFNESREVFIFILTTRVGGLGTNLPGANRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFILNVDNKSGSTETSTIFSQISEDVNIVGAHEDKQDKHKHPQNSESGSDDVVVNNDGRPKTRSVKGKGKEKTDRLDEADEETNILKSLFDAHGLHSAVNHDLIMNANGEEKMRLEEQASQVAQRAAEALRQSRKLRSRESIAVPTWTGKSGTAGAPSSFRRKFGSTVNSQLVSNCKESDESAGDGTRRLNGSAAGASSGKALSSAELLARIRHSEEKAIGAGLEHQFGRAVDLYNQARSVDVGSSRASKKVDGVQPEVLIREICTFLQQRGGRSDSSSIVQHFKDRIPSTNLALFKNLLKEIATLEKGSNGSHWILKPDYQE 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1912 1228 MobiDBLite consensus disorder prediction 313 361 - -
Lele13g1912 1228 Pfam SNF2-related domain 400 722 IPR000330 GO:0005524|GO:0140658
Lele13g1912 1228 SMART ultradead3 393 616 IPR014001 -
Lele13g1912 1228 Coils Coil 121 148 - -
Lele13g1912 1228 CDD SF2_C_SNF 740 865 - -
Lele13g1912 1228 Gene3D - 664 954 IPR027417 -
Lele13g1912 1228 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 745 904 IPR001650 -
Lele13g1912 1228 Coils Coil 1017 1037 - -
Lele13g1912 1228 MobiDBLite consensus disorder prediction 167 193 - -
Lele13g1912 1228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 409 608 IPR014001 -
Lele13g1912 1228 MobiDBLite consensus disorder prediction 487 510 - -
Lele13g1912 1228 MobiDBLite consensus disorder prediction 1080 1103 - -
Lele13g1912 1228 Pfam Helicase conserved C-terminal domain 747 854 IPR001650 -
Lele13g1912 1228 SMART helicmild6 771 854 IPR001650 -
Lele13g1912 1228 PANTHER SNF2/RAD54 FAMILY MEMBER 161 1210 - -
Lele13g1912 1228 MobiDBLite consensus disorder prediction 92 113 - -
Lele13g1912 1228 Gene3D - 378 657 IPR038718 -
Lele13g1912 1228 MobiDBLite consensus disorder prediction 966 984 - -
Lele13g1912 1228 MobiDBLite consensus disorder prediction 337 354 - -
Lele13g1912 1228 FunFam DNA excision repair protein ERCC-6 665 943 - -
Lele13g1912 1228 CDD DEXHc_ERCC6 397 607 - -
Lele13g1912 1228 FunFam Protein CHROMATIN REMODELING 8 375 657 - -
Lele13g1912 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 658 IPR027417 -
Lele13g1912 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 911 IPR027417 -
Lele13g1912 1228 MobiDBLite consensus disorder prediction 244 279 - -
Lele13g1912 1228 MobiDBLite consensus disorder prediction 938 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1912 Lele-ChrLele13 26793640 26799967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1912 728 908 RAD5 or RAD16-like Gene Family AT1G11100 34.239 6.34e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele13g1912 SNF2_N 5.2e-63 CL0023