Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1909 ATGGATCATGTGATTGCTGGCAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGATCTTTTGGAGAGCTTTATTTAGCTGTTAACATACAGACTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGAGCAGGCATCCACAGCTTCATTATGAATCAAAATTATATATGCTTCTTCAAGGAGGAACGGGGATTCCTCACCTCAAGTGGTTTGGAGTTGATGGAGACTACAATGTTATGGTTATTGACCTTCTTGGGCCAAGCTTAGAAGATCTGTTCAACTATTGCAATCGGAAGTTCAGCTTAAAGACAGTGTTGATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAAAGGATTTCTTCACCGCGACATAAAGCCTGACAATTTTTTAATGGGTCTAGGGCGCAAAGCAAACCAGGTTTACATCATTGATTATGGTCTTGGAAAGAAGTTTAGAGATCTACAGACTCATAAGCACATACCATACAGAGAAAATAAGAACCTTACTGGCACAGCTCGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGAGATGATCTGGAATCTCTTGGTTATGCGCTCATGTACTTCTTAAGAGGAAGCCTTCCCTGGCAAGGTCTGAAGGCTGGCAACAAAAAACAGAAGTATGATAAGATCAGTGAGAAGAAATCATCAACTCCAATAGAGGTTCTCTGCAAATCATACCCATCTGAGTTTGTATCCTACTTCCACTACTGCCGATCATTACGATTTGAGGACAAGCCAGATTATTCGTATTTAAAGAGGCTTTTCCGAGATTTATTTATTCGAGAAGGCTATCAGTTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCTCAGATTGGTGGCAGCTCGAAAGGGCGGCTTGGCAATGGCAAGGCACTTATGAATGCAGGACCGTCTATAAAAAAACCGGAAAAGATCCCAGCTGGGAAAGAGATTCGAGAGAAATTTGCTGGTGGTGCTGAAGCATTTACCCGAAGGAATCCCACAAGTTCTAGTCCTCATGGTGATCACACCAAAACTAAGATTTTCGAGGAGGTATCACGCAGGGATGTGTATGATCAAGAAAAGGGGCGCAGTTCCTCTCGATATGGAAGCACCTCAAGAAAAGCCATAATCTCATCGAACCGGCAGAGTTCCTCCGGTGACCATACTGATGGCCGTACTGGCTGGCTGACGTCAGGTGCCAACCGCCCATCTAGCGCATATAGAACTCAAGCTGTGCATGAGACCAAACTACCAAGTTTTACACGTAACGGGTCTTCAAGAGCCAATCGTGACGATACTCTCGGGAGATTTGAGCTGCTCTCTATTAGAAAGTAA 1377 0.4306 MDHVIAGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLEPVKSRHPQLHYESKLYMLLQGGTGIPHLKWFGVDGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSKGFLHRDIKPDNFLMGLGRKANQVYIIDYGLGKKFRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYALMYFLRGSLPWQGLKAGNKKQKYDKISEKKSSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSKGRLGNGKALMNAGPSIKKPEKIPAGKEIREKFAGGAEAFTRRNPTSSSPHGDHTKTKIFEEVSRRDVYDQEKGRSSSRYGSTSRKAIISSNRQSSSGDHTDGRTGWLTSGANRPSSAYRTQAVHETKLPSFTRNGSSRANRDDTLGRFELLSIRK 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1909 458 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lele13g1909 458 MobiDBLite consensus disorder prediction 356 376 - -
Lele13g1909 458 MobiDBLite consensus disorder prediction 338 445 - -
Lele13g1909 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lele13g1909 458 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1909 458 PANTHER CASEIN KINASE-RELATED 9 392 - -
Lele13g1909 458 FunFam Casein kinase 1-like protein 1 330 - -
Lele13g1909 458 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1909 458 FunFam Putative Casein kinase I 1 85 - -
Lele13g1909 458 MobiDBLite consensus disorder prediction 377 442 - -
Lele13g1909 458 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1909 458 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lele13g1909 458 Gene3D Transferase(Phosphotransferase) domain 1 1 321 - -
Lele13g1909 458 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1909 Lele-ChrLele13 26776062 26780010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1909 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 3.12e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lele13g1909 Pkinase 3.9e-25 CL0016