Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1903 ATGGGGGATAGGATCGGAGCAGATAGGAAAGGCCATACCAACAAGGGTGTGCAGAAGGTAATGAAGTGCCTATGCTCAGAGGAGCCGTCAAGAGAAGAAGACGATATGGTTCCTTCTTGTCAAATTGACGAGAAGCCAGATACTAGCAATATCGAGAAAGTTGAATCATCCCTTTGTGGAAGTGATTGTTTGAACTATGAGGAAGCTAGAGCTCGTTTAGGAAAATATGAATACAGGAAAGGAAATATAGAAGCTGCTTTACATGTTTTTGAGCGAATAGATACAGAGGTTGCAACTTCCATGATTAAAAGTTCTCTTGCCAAAAGGGGAAAGCACCACAAGAGACTTCCCCGGAATTATGCTACGCAGTCATTGTCTATTCGTTCTGTTAGCTTACTGTTGGAAGCATTCTTCCTAAAAGCAATGTGTTTGCAGGCTCTTGGAAAGTTTAAAGAAGCTGCCCTATCTTGCAAAGTTATTCTGGACATGGTTGAATCTTCATTACCCCAAGGCTTGCCTGAAAACTTTGGTGTTGGATGTAAATTGCAGGAGACTCTGAGCAAGGTGATTGAGTTGCTTCCTGAATTGTGGAAACTTGCAGATAGTCCACATGAAGCTATTATATCCTACCGCCGGGCACTTCTTCATAAGTGGAACCTTGATGCAGAAACCACAGCAAAGATTCAGAAAGAGTTTGTTGTTTTTCTTCTTTATAGTGAAGGGGAAGCAAGTCCTCCCAGTCTTCGTTCCCAAATGGACACTTCATATGTACCCAGAAATAACTTAGAAGAGGCTATACTTCTTTTGATGATTCTTCTAAGACAGGTCTGTTCCAATAGAATTGAGTGGGATCCTTCAATTTTGGATCATCTTTCATTTGCTTTGTCTGTTTCAGGGGATTTGACAGCTTTAGCCAATCAATTGGAACAATTGCTCCCCTCCGCTGTCAATCCAACAGAAAAGTGCCAAACACTTGCTATCTGTTATTATGGAGCAGGTCAAGACTTGGTGGCATTGGGACTTCTTAGAAAATTGTTATGTAGCAGAGAGGACCCAAAATATGTTTTAGCTTTGCTAATGGCTTCAAAGATTTGTTGTGAGAACCTTATTCTTGCTGGAGAAGGGATAAGTTTTGCTTGCAGATTGCTTGAGAAATTAGGAGGAAGATGCGATCAGTTAGCAAGTTCTGCCTATTGCTTCCTTGGTCTTTCACTTTCAGTACATTCAAAATCTTCCATTTCTGATTCTGAGAGGTATAAAAGACAATCTGAGGCACTTCACAACCTGGAAATTGCCTCCAGAATGTCCAGAATGAGAAACCCTCTGATACTCTACCATCTCAGTTTAGAATATGCTGAACAGAGAAAGTTGGATGCTGCCCTTGATTATGCCAAATGCTTGCTAGAACTGGAAGCAGGGTCTAATGTTGAAGGGTGGTTATTATTAGCCAGGATATTATCAGCTCAAAGTCGATTTTTGGATGCTGAATCTATTATCTATGCTGCTTTGGACCAGACTGGGAAATGGGATCAAGGAAATTTGCTGCGAACAAAAGCTAAACTTCAGATTGCAAGGGGCCATTTAAGGAGGGGCATGGAAACGTATATTCAGCTTCTTGCTGTTCTTCAAATTCAGAGCACAAGCTTTGGTTCTGAGAAGAAGCTAAAGAAGGACATCAAAGGGGATACCCAGAGATTGGAAATGGAAATATGGCATGATCTTGCTTTCTTATACATAAGCCAGTCAAAATGGCTTGATGCAGAAGCGTGTCTTTCGAAGTCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAACAGGTCTAATATACGAAGCAAAGTGCCTTTATAAAGAGGCTCTAAAAGCTTATCGTGAAGCTTTGGATATTGATCCCAACCACGTCCCAAGCTTGATCTCTAGTGCTTTGGTTCTCAGAAGGTGCAGTAAAGAATTGGATTCTGCAGTTCGAGGCTATCTGATGGATGCTCTACGGCATGACAAAATGAATGCTACTGCTTGGTACCATCTTGGCCTTCTTCACAAGGCTGAGGGCACAGTATCGTCATTAATGGAAGCCATGGAATGCTTCAAGGCTGCACACTATCTTGAAGAAACTGCACCAGTTGAGCCTTTCAGATGA 2145 0.4172 MGDRIGADRKGHTNKGVQKVMKCLCSEEPSREEDDMVPSCQIDEKPDTSNIEKVESSLCGSDCLNYEEARARLGKYEYRKGNIEAALHVFERIDTEVATSMIKSSLAKRGKHHKRLPRNYATQSLSIRSVSLLLEAFFLKAMCLQALGKFKEAALSCKVILDMVESSLPQGLPENFGVGCKLQETLSKVIELLPELWKLADSPHEAIISYRRALLHKWNLDAETTAKIQKEFVVFLLYSEGEASPPSLRSQMDTSYVPRNNLEEAILLLMILLRQVCSNRIEWDPSILDHLSFALSVSGDLTALANQLEQLLPSAVNPTEKCQTLAICYYGAGQDLVALGLLRKLLCSREDPKYVLALLMASKICCENLILAGEGISFACRLLEKLGGRCDQLASSAYCFLGLSLSVHSKSSISDSERYKRQSEALHNLEIASRMSRMRNPLILYHLSLEYAEQRKLDAALDYAKCLLELEAGSNVEGWLLLARILSAQSRFLDAESIIYAALDQTGKWDQGNLLRTKAKLQIARGHLRRGMETYIQLLAVLQIQSTSFGSEKKLKKDIKGDTQRLEMEIWHDLAFLYISQSKWLDAEACLSKSKAIKLYSASRCHATGLIYEAKCLYKEALKAYREALDIDPNHVPSLISSALVLRRCSKELDSAVRGYLMDALRHDKMNATAWYHLGLLHKAEGTVSSLMEAMECFKAAHYLEETAPVEPFR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1903 714 Pfam Tetratricopeptide repeat 605 635 IPR013105 -
Lele13g1903 714 SUPERFAMILY TPR-like 567 686 IPR011990 GO:0005515
Lele13g1903 714 Pfam Tetratricopeptide repeat 449 504 - -
Lele13g1903 714 Gene3D Tetratricopeptide repeat domain 65 374 IPR011990 GO:0005515
Lele13g1903 714 PANTHER PROTEIN NPG1 39 714 IPR043376 -
Lele13g1903 714 Gene3D Tetratricopeptide repeat domain 556 710 IPR011990 GO:0005515
Lele13g1903 714 Gene3D Tetratricopeptide repeat domain 395 555 IPR011990 GO:0005515
Lele13g1903 714 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
Lele13g1903 714 SUPERFAMILY TPR-like 68 505 IPR011990 GO:0005515
Lele13g1903 714 SMART tpr_5 134 167 IPR019734 GO:0005515
Lele13g1903 714 SMART tpr_5 441 474 IPR019734 GO:0005515
Lele13g1903 714 SMART tpr_5 568 601 IPR019734 GO:0005515
Lele13g1903 714 SMART tpr_5 602 635 IPR019734 GO:0005515
Lele13g1903 714 SMART tpr_5 476 509 IPR019734 GO:0005515
Lele13g1903 714 SMART tpr_5 672 708 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1903 Lele-ChrLele13 26757588 26760535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1903 15 714 Calmodulin-binding Proteins AT4G28600 53.352 0.0 692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1903 13 26757588 26760535 Lele15g0505 15 2962383 2964582 hybridization
Lele13g1903 13 26757588 26760535 Lele16g0526 16 2904108 2905120 hybridization