Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1897 ATGACAAGCTTTCACAAGGCTTCTGCTCTATTCTTTCACTTACTCTTGCTCTGTTTTCTTCCATGGAAGATAACTGCATCGCTGAGAACAGAAGCAGAAGCTCTAGTGAAATGGAAAAACAGTCTGTCTCCTTCTCTTCCTTCTACTCTCAACTCATGGTCCCTCACCAATACGGACAACCTCTGCAATTGGGGTGCCATAGTCTGTGACAGCACTAATACAACAGTCTCAGAGATAAACCTCTCTGGAGCCAATCTTTATGGCACACTCACGGGTTTGGATTTCACTTCTCTCCCCAATCTCACCCGCTTGGACCTCGGTTTCAATAGATTCAATGGGTCAATTCCATCTTCTATTGTTAACCTCTCCAAGCTCATTTTCCTGGACTTGGAATACAACTCCTTCAATGGAACTCTGCCTGCTGAGCTAGACCAGCTGAAAGAGCTTCAATATATGAGTTTATACAACAACAACCTTAATGGGACCATTCCCTACCAGGTCACAAGCCTCCAAAAGGTACGGCACCTAGACTTTGGATCAAACTACTTTGTTAATCCTCCTGACTGGTCAAAATATTCAGGCACGTCTTCCTTAACCCACCTCAGTTTGGCTCTCAATAGATTCACTTCTGAATTTCCAAGCTTCATTCTAGAGTGCCGAAATTTGACATATCTAGACGTGTCCTACAATCCGATTATTTTAATACCGGAGTCATTGTATACCCGTCTGCAAAAGCTTGAATACCTCAACATGAGCAATTGTGAACTAGAAGGACACTTGTCATCAAACTTGTCTAAGCTTTCCAATCTGAAAGAAATTCATCTGGGTGTTAACAAGTTGACAGGTTCCATTTTCACGGAGATAGGATCAATATCTGGACTGCAAGTTCTTGAATTGAATGATAATTTACTCCAGGGGGAAATTCCTTCCTCTCTAGGTCAGCTTAGTAACTTGCGGCGTCTTGATCTCAGCCACAATTCCTTAAATTCTACCATTCCTTCTGAGCTTGGCCTTTGTACCAATCTAACCTACCTGTCTCTAGCAGTGAATTCTCTGGTTGGTTCCTTGCCTATGTCGTTATCCAATCTGACAGAAATTGAAGAATTGGGTTTATCAGATAATCTCTTTACAGGTCAAATCCCTGCTTTGTTGATCCCTAAATGGACTGAGTTATTTTCTTTGCAACTTCAAAACAATAAATTCATGGGAGAAATTCCTGCATCGATTGGCCAATTGACAAAACTTGAACTTCTTTTTCTATACAACAATACATTCTCTGGCCCTATTCCTCCCGAGATTGGGAACTTGAAAGCAACGACACAGTTAGACCTTTCTTCAAACAAATTTTCTGGTCCAATTCCTTCAACCATATGGAGACTTAAGAACATCACAAACATAACTCTTGCCTCGAATAACCTCTCAGGAACCATCCCCATGGAAATTGGAAACCTTACTTCATTGACAAATTTTGATGTCAACAGTAATTTTCTCCATGGTGTGTTGCCCAAGACTATTTCCCAGTTAACCAAGTTAAAGATTCTTTCTGTATTCACCAACAATTTTTCGGGTGGAATTCCCAGAGATTTTGGGAAGTATAGCCCTGATTTGAGTGTAGTCTTTCTTTCAAATAATAGCTTCTCCGGAGAACTGCCGCCTCATTTGTGCAGCGGTTTTGCACTCACAGACTTAAGGGTGAATAACAACAGTTTCTCAGGACCATTGCCTAAGTGCTTGAGAAATAGTTCGGCACTAAAAGTGGTGAAGCTCGAAAGAAATCAATTCACAGAAAACATCACAGAAGCATTTGGGATTTACCCAAGTCTTACATCTATCACACTCAGTGGTAATCAGTTTGTTGGTGAACTCTCCCCGAAATGGAGTGAATGCAAGAACTTAACCAGGATAGAAATGGATATCAACAAGCTTTCTGGGAAAATTCCATCTGAATTGAGTTTGTTAAGCCAATTACAATATCTAAGCCTGCACTCCAATCAATTTACTGGCAGCATTCCACCAGAAATGGGAAATCTAAGGCAACTTTACTTGTTCAACTTGAGCGGTAATCATTTGACAGGAGAAATCCCCCAGAGTCTTGGCAGATTGGGCCGCCTAAATAATCTTGATTTATCAAAGAACAACTTCACTGGAAGCATACCAAAAGAGCTCAGTAACTGTGACAAACTAATTAGCTTGAATTTGAGCCATAACAGTTTGACTAGGGAGATACCATCTGAACTTGGCAATCTGTTCTCCCTCCAATACTTTCTGGACCTCAGCAGCAACTTTCTTTCAGGGCCAATTCCTCAGAACCTAGAAAAGCTCATTCATTTGGAGATCCTCAATGTCTCACACAACAATCTTTCAGGGGCAATCCCACAATCATTTTCAAGTATGCTCAGTCTTCAATCGATCGATTTTTCTTACAACAAGTTGACGGGTCCTATCCCCTCTGGGGGTATTTTCCAAACAGCACCTACTGAAGCTTATGTTGGAAATTCTGGTTTGTGTGGCAAGGCAAAAGGATTAATTGCTTGTTCCACAAAATCTTCCCAGGACAAATCTGGAGGGGTCAACAAAAAGGTACTTCTTGGTGTTATTATACCAGTTTGTGCGCTATTAATTTTCGTGCTGATTGTTGTTAGAATGCGAGTGTTTCAACAACGGACCAGACTTCCAGACGAAGAGTCCAGCGATGCTCAAAAGAATGAAAAAACTGTAAGCATGATTTGGGGAAGAAAGGGAAAATTCACATTTGCTGAAATTGTTAAAGCCACAGATGACTTCGATGACAAATGCTGCATCGGAAAAGGAGGTTTTGGAAGTGTTTACAGAGCAGAATTACCAACAGGTACAGTTGTCGCCGTCAAAAGACTCAAAATCTCAAACTCCAGTGACATTCCAGCCGAGAATCTTCGGAGTGTTCAGAATGAGATAAAAACTCTTACCGAAGCAAAACACCGCAATATCATAAAGCTTTATGGGTTTTGTTACACAGAGGAACACGCATACTTGGTTTACGAATATGCAGAAAATGGCAGCCTGGGAAAAGTGTTGTACGGAGATGAAATGAAGATGGTGTTAAGCTGGCCTCAAAGGGTGAAAATTGTGCAGGGGATAACACAAGCAATAGCGTACCTGCACAGCGATTGTATCCCACCGGTGGTGCATCGAGATGTGAAGTTGAATAACATATTGTTGGACTCAGAATTTGAACCCCGCCTCGCAGATTTTGGCATAGCAAAGCTTCTTAGGCACAATTCAACAAGCTGGACCTCAATTGCTGGCTCCTACGGCTACATGGCTCCAGAGCTAGCACAGACAATCCGGGTAACAGAGAAGTGTGATGTTTATAGTTTTGGAGTGGTGGTATTAGAGATAGTACTGGGAAAGCACCCTGGCGATTTCTTGGCCACATTGCCCTCAATGGAGAATCCACAAGTGTTGTTGAAGGATGTAATAGACCGAAGACTCACACCTCCACCAGCTCGATTGGGTGAAGCGATAGCCTTTATAATGACCATAGCCTTGGCATGCACGCGAACGCACCCCGAGTCTAGACCCAGCATGCATTTTGTGGCCCAACAATTATCGGCTATTGAGCAGACTACTCTAGCTGAGCCCTTTAGCACAATCACCCTAAATAGGCTAACAAGGTTTCATAAGTAG 3666 0.4212 MTSFHKASALFFHLLLLCFLPWKITASLRTEAEALVKWKNSLSPSLPSTLNSWSLTNTDNLCNWGAIVCDSTNTTVSEINLSGANLYGTLTGLDFTSLPNLTRLDLGFNRFNGSIPSSIVNLSKLIFLDLEYNSFNGTLPAELDQLKELQYMSLYNNNLNGTIPYQVTSLQKVRHLDFGSNYFVNPPDWSKYSGTSSLTHLSLALNRFTSEFPSFILECRNLTYLDVSYNPIILIPESLYTRLQKLEYLNMSNCELEGHLSSNLSKLSNLKEIHLGVNKLTGSIFTEIGSISGLQVLELNDNLLQGEIPSSLGQLSNLRRLDLSHNSLNSTIPSELGLCTNLTYLSLAVNSLVGSLPMSLSNLTEIEELGLSDNLFTGQIPALLIPKWTELFSLQLQNNKFMGEIPASIGQLTKLELLFLYNNTFSGPIPPEIGNLKATTQLDLSSNKFSGPIPSTIWRLKNITNITLASNNLSGTIPMEIGNLTSLTNFDVNSNFLHGVLPKTISQLTKLKILSVFTNNFSGGIPRDFGKYSPDLSVVFLSNNSFSGELPPHLCSGFALTDLRVNNNSFSGPLPKCLRNSSALKVVKLERNQFTENITEAFGIYPSLTSITLSGNQFVGELSPKWSECKNLTRIEMDINKLSGKIPSELSLLSQLQYLSLHSNQFTGSIPPEMGNLRQLYLFNLSGNHLTGEIPQSLGRLGRLNNLDLSKNNFTGSIPKELSNCDKLISLNLSHNSLTREIPSELGNLFSLQYFLDLSSNFLSGPIPQNLEKLIHLEILNVSHNNLSGAIPQSFSSMLSLQSIDFSYNKLTGPIPSGGIFQTAPTEAYVGNSGLCGKAKGLIACSTKSSQDKSGGVNKKVLLGVIIPVCALLIFVLIVVRMRVFQQRTRLPDEESSDAQKNEKTVSMIWGRKGKFTFAEIVKATDDFDDKCCIGKGGFGSVYRAELPTGTVVAVKRLKISNSSDIPAENLRSVQNEIKTLTEAKHRNIIKLYGFCYTEEHAYLVYEYAENGSLGKVLYGDEMKMVLSWPQRVKIVQGITQAIAYLHSDCIPPVVHRDVKLNNILLDSEFEPRLADFGIAKLLRHNSTSWTSIAGSYGYMAPELAQTIRVTEKCDVYSFGVVVLEIVLGKHPGDFLATLPSMENPQVLLKDVIDRRLTPPPARLGEAIAFIMTIALACTRTHPESRPSMHFVAQQLSAIEQTTLAEPFSTITLNRLTRFHK 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1897 1221 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 533 849 - -
Lele13g1897 1221 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515
Lele13g1897 1221 Pfam Leucine Rich Repeat 776 797 IPR001611 GO:0005515
Lele13g1897 1221 Pfam Leucine Rich Repeat 317 335 IPR001611 GO:0005515
Lele13g1897 1221 Pfam Leucine Rich Repeat 727 749 IPR001611 GO:0005515
Lele13g1897 1221 SUPERFAMILY L domain-like 49 430 - -
Lele13g1897 1221 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Lele13g1897 1221 SUPERFAMILY RNI-like 494 813 - -
Lele13g1897 1221 SMART LRR_typ_2 315 339 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 219 242 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 243 267 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 146 170 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 774 797 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 412 436 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 484 507 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 701 725 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 653 677 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 98 122 IPR003591 -
Lele13g1897 1221 SMART LRR_typ_2 727 749 IPR003591 -
Lele13g1897 1221 FunFam Leucine-rich repeat receptor-like protein kinase 1009 1210 - -
Lele13g1897 1221 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1054 1066 IPR008271 GO:0004672|GO:0006468
Lele13g1897 1221 SMART serkin_6 928 1199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1897 1221 Gene3D Ribonuclease Inhibitor 535 854 IPR032675 -
Lele13g1897 1221 ProSiteProfiles Protein kinase domain profile. 928 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1897 1221 Gene3D Ribonuclease Inhibitor 188 282 IPR032675 -
Lele13g1897 1221 Pfam Leucine Rich repeat 219 232 IPR001611 GO:0005515
Lele13g1897 1221 Gene3D Transferase(Phosphotransferase) domain 1 1009 1210 - -
Lele13g1897 1221 CDD STKc_IRAK 934 1196 - -
Lele13g1897 1221 Gene3D Ribonuclease Inhibitor 283 385 IPR032675 -
Lele13g1897 1221 PANTHER RECEPTOR-LIKE PROTEIN 55 592 1200 - -
Lele13g1897 1221 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Lele13g1897 1221 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 432 529 - -
Lele13g1897 1221 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lele13g1897 1221 Gene3D Phosphorylase Kinase; domain 1 891 1008 - -
Lele13g1897 1221 FunFam Leucine-rich repeat receptor protein kinase MSP1 892 1008 - -
Lele13g1897 1221 Pfam Protein kinase domain 933 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1897 1221 FunFam MDIS1-interacting receptor like kinase 2 193 386 - -
Lele13g1897 1221 SMART LRR_sd22_2 98 124 - -
Lele13g1897 1221 SMART LRR_sd22_2 484 510 - -
Lele13g1897 1221 SMART LRR_sd22_2 267 296 - -
Lele13g1897 1221 SMART LRR_sd22_2 219 251 - -
Lele13g1897 1221 SMART LRR_sd22_2 315 338 - -
Lele13g1897 1221 SMART LRR_sd22_2 339 365 - -
Lele13g1897 1221 SMART LRR_sd22_2 412 438 - -
Lele13g1897 1221 SUPERFAMILY Protein kinase-like (PK-like) 907 1196 IPR011009 -
Lele13g1897 1221 FunFam Nuclear pore complex protein NUP107 28 187 - -
Lele13g1897 1221 ProSiteProfiles Leucine-rich repeat profile. 317 339 IPR001611 GO:0005515
Lele13g1897 1221 Gene3D Ribonuclease Inhibitor 386 459 IPR032675 -
Lele13g1897 1221 Gene3D Ribonuclease Inhibitor 460 534 IPR032675 -
Lele13g1897 1221 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1897 Lele-ChrLele13 26725422 26729162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1897 10 671 Receptor kinase-like Gene Family AT4G08850 32.229 6.10e-82 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele13g1897 Pkinase 5.8e-49 CL0016