Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1895 ATGGCAGCACGCACTACTTCCTCCATTGAAAGATCAAGCACTAAACAGCTCAATAATATGGGTATGTCTGGACCGTTGCCGTCATCCTTGTCAGTCCTTCCAATGCCTATAGGAGAGACGTTTGCCAAGTTTTCTGATTCTCAGCCGGCTGTCATGGCAAAAGAGCTTATGACTGGGCCTATAACTGAGCCGAGTCATTTAAATTCCAATGGAGCAGTTGGGCACATGTTTTCATCTTCCCCTGGTTATTTAACTGATCTTCATCACTCATCTCTTTCTCCTCATGAAAAACACTCAACAAGTGCTCATTTCATTTCACAGTCATCCAGCAACACGGCTTCATTGCCATTTTCTTATTCTTCCAATAGTGGACAGCTTCCTTGTTCAACACCAAATAATTATTTCAAAGAAAACAGTGCTTCCTGGAATATAGAACCCCTCCCTAACTTTCTTGATTTCCCTGTAAATACTACCATTGAGAATAGTCAAGCAGATAACAGCGCCTGCAATGTCATGGCATCTGAGGAGTATGGTAAGCGAAATGAATGGCAAGAGTGGGCTGACCAGCTTATAAGTGAAGATGACCCTTTGACTTCTAATTGGAATGACCTTCTTACTGACAACGTTCAAGATCTTGAACCAAAGGTGGGATTCCAGGATTCACATATTCCAGGAAACCAGTCCCAAGGTCAGCAGCTACTTCCTGCTTCATCTGGAGACAATGGCTTCAGTGCTCCCCCAGCTTCCTCGGCAAGTTCTGCTCCTGCCAAGCCACGGATGCGTTGGACGCCAGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACAAACTTGGTGGCAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAGGGATTAACGATATATCATGTTAAAAGTCACTTGCAGAAATACAGGACTGCTAGATATAAACCGGAACCATCTGAAGGATCCTTGGATAAACGACTAAGTTCCATTGAAGATATGCCTCCTCTAGACTTGAGAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAGCAACTTGAGATTCAACGAAACCTACAACTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGACGCTGACAAGAAGGCATCATCAGCATCTGCCACAGAGAATCCATCTGGAGTGCCCTCAGATGCTATCAAAGATTGTCCTGCCAAAGGTGAAGTGGAAGCCTCCCAATTGGAGGGCGATTGCAAGTCAGGACGCGATCAAGCCAATAGCAGTACTGCAGCTGACGAAAGCTCTATGAAGAATGATGGCCCTGAAAATCAAGCTTCTGAGAATCCTAAGCAACAAACCAGTGAAGAGAGTGGGCCTGCCTCAAAGAGGCAGAGAACAGTGGAGTAA 1443 0.4539 MAARTTSSIERSSTKQLNNMGMSGPLPSSLSVLPMPIGETFAKFSDSQPAVMAKELMTGPITEPSHLNSNGAVGHMFSSSPGYLTDLHHSSLSPHEKHSTSAHFISQSSSNTASLPFSYSSNSGQLPCSTPNNYFKENSASWNIEPLPNFLDFPVNTTIENSQADNSACNVMASEEYGKRNEWQEWADQLISEDDPLTSNWNDLLTDNVQDLEPKVGFQDSHIPGNQSQGQQLLPASSGDNGFSAPPASSASSAPAKPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGSLDKRLSSIEDMPPLDLRTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSDADKKASSASATENPSGVPSDAIKDCPAKGEVEASQLEGDCKSGRDQANSSTAADESSMKNDGPENQASENPKQQTSEESGPASKRQRTVE 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1895 480 Pfam Myb-like DNA-binding domain 259 310 IPR001005 -
Lele13g1895 480 Pfam MYB-CC type transfactor, LHEQLE motif 342 389 IPR025756 -
Lele13g1895 480 MobiDBLite consensus disorder prediction 390 480 - -
Lele13g1895 480 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 314 IPR017930 -
Lele13g1895 480 MobiDBLite consensus disorder prediction 216 259 - -
Lele13g1895 480 MobiDBLite consensus disorder prediction 431 480 - -
Lele13g1895 480 Coils Coil 345 365 - -
Lele13g1895 480 Gene3D - 256 315 - -
Lele13g1895 480 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 257 311 IPR006447 GO:0003677
Lele13g1895 480 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 223 469 IPR044848 GO:0003700
Lele13g1895 480 MobiDBLite consensus disorder prediction 221 251 - -
Lele13g1895 480 SUPERFAMILY Homeodomain-like 255 311 IPR009057 -
Lele13g1895 480 FunFam Myb family transcription factor 256 314 - -
Lele13g1895 480 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1895 Lele-ChrLele13 26716916 26719753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1895 9 415 G2-like Transcription Factor Family AT4G28610 45.116 6.21e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele13g1895 Myb_DNA-binding 4.9e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1343 05 8432276 8438837 Lele13g1895 13 26716916 26719753 CCT
Lele13g2363 13 29343130 29352612 Lele13g1895 13 26716916 26719753 CCT
Lele15g0056 15 331728 341994 Lele13g1895 13 26716916 26719753 CCT
Lele16g0058 16 369675 373629 Lele13g1895 13 26716916 26719753 CCT
Lele13g1895 13 26716916 26719753 Lele15g0513 15 2998325 3001155 hybridization
Lele13g1895 13 26716916 26719753 Lele16g0533 16 2950334 2953194 hybridization