Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1886 ATGGAGAAATACTACATGGCTTCCTCAAGGGAACTGGTTCGTATTGTAAGCATCCAGAAATCTCCAATTATAAATCTTTTTGGTGAATCAATTGCTGGAGCCACAACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGAAACCTCTATCTTCTAGATTGTTTTGCACGTCCTTTTTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCTTGCGCTTGGAATTACTGTCAACCTTTGTGTTTGCTGTCTGCATGATATTAGTAGTGAGCTTTCCACGTGGAACTATTGACCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGCTTATCAAAGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATAATATCTATTGAAAGAATATACCAATACAGCCAAATTCCTAGTGAAGCACCAACAAGTATTGAAGAATTTCGTCCTCCATGCACATGTCCTGAGAATGGGACAATTAAAATTGTTGATTTAAAGGTTCGTTACAAGGAGAATATGCCTTTGGTGCTCGAAAGAGTATCTTGCACATTTCCCGGTGGAAAGAAAATTGGAATAGTAGGACGAACTGGCAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGATTGATTGAACCTGCAGGTGGGAGTATCTTCATAGACAACATTAATATTTCTGATATTGGCCTTCATGACCTTCGTAGCCGTCTCAGTATCATACCACAAGATCCAAGTCTATTTGAAGGCACCATCCGAGGAAATCTTGATCCTCTTGAAGAGCACTCAGATAAAGAGATTTGGGAGGCTCTAGATAAGTCTCAGCTTGGAGGAATTATCCGTGAAAAGGTGCAAAAGCTTGATACACCAGGTAGAATTGCAGAGTTTGATACTCCATCTCGACTATTAGAGGATAAATCTTCCATGTTTCTAAAGTTGGTGGCTGAGTATTCATCACGCTCAAGTGGCATTCCAGATTTTTGA 999 0.4004 MEKYYMASSRELVRIVSIQKSPIINLFGESIAGATTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRLELLSTFVFAVCMILVVSFPRGTIDPSMAGLAVTYGLNLNARLSKWILSFCKLENKIISIERIYQYSQIPSEAPTSIEEFRPPCTCPENGTIKIVDLKVRYKENMPLVLERVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAGGSIFIDNINISDIGLHDLRSRLSIIPQDPSLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGGIIREKVQKLDTPGRIAEFDTPSRLLEDKSSMFLKLVAEYSSRSSGIPDF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1886 332 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 287 - -
Lele13g1886 332 Pfam ABC transporter 183 290 IPR003439 GO:0005524
Lele13g1886 332 FunFam ATP binding cassette subfamily C member 5 149 258 - -
Lele13g1886 332 SUPERFAMILY ABC transporter transmembrane region 3 146 IPR036640 GO:0005524|GO:0016020
Lele13g1886 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 294 IPR027417 -
Lele13g1886 332 Gene3D - 149 296 IPR027417 -
Lele13g1886 332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 118 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele13g1886 332 Gene3D ABC transporter type 1, transmembrane domain 2 147 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1886 Lele-ChrLele13 26675845 26677696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1886 182 261 Calmodulin-binding Proteins AT2G36910 32.500 6.87e-11 61.6