Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1882 ATGGCGCTATGGATGGAAAAGGGTTCTGAGCCCTTGACCGAAAGCGAGAAAGCAGACCTTGATGCTATTGCTGCACTGAAAGAGTCCACTGCTAGTGAGCTCAAGGAAAAGGGCAATCAATATGTCAAAATGGGTAAAAAACATTATTCCGATGCTATTGAGTGTTACACAAGGGCAATAAATCAGAAAGTCTTGAGCGACTTAGAGAGCTCAGTTCTTTTTGCAAACAGAGCACATGTAAATTTGCTGCTAGGAAATTATAGACGTGCTCTAACTGATGCAGAGGAGGCAATTAAGTTATCCCCCTCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCATCTCTTTCATTAAATTTGTTGGCCGAAGCTCAATCTCATTGTCAAAACGGCCTTCAGTTGGACCCAAATAATGAAGAATTGAAGAAGCTTGGCCAACAGATTGATCTAAAGAAAGTAGAACAGGAAAATCATGAAGCTGAAGTCTCCAAAGCTATTGCAGAGGCAAAGGAACTTGTGTTGGCAATAGAAAATAGAGGCTTGAAGATCGGGAAGGCAATGTTTCGAGAACTTAGTGGACTTAAAAAACCAGTATTAGACATAAATAACATTCTCCATTGGCCTGTTCTTCTCCTGTATGCGGAGGTTATGTCCAGTGACTTCATTGAAGATTTCTTTGAGACTGACATGTTTACAGTTCATCTTGATATGATATCCTTTTCTATAAATTGCTTTGTGCGCTTTATATCTGAATGA 756 0.3955 MALWMEKGSEPLTESEKADLDAIAALKESTASELKEKGNQYVKMGKKHYSDAIECYTRAINQKVLSDLESSVLFANRAHVNLLLGNYRRALTDAEEAIKLSPSNIKAIYRAAKASLSLNLLAEAQSHCQNGLQLDPNNEELKKLGQQIDLKKVEQENHEAEVSKAIAEAKELVLAIENRGLKIGKAMFRELSGLKKPVLDINNILHWPVLLLYAEVMSSDFIEDFFETDMFTVHLDMISFSINCFVRFISE 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1882 251 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 238 - -
Lele13g1882 251 Gene3D Tetratricopeptide repeat domain 25 157 IPR011990 GO:0005515
Lele13g1882 251 Pfam Tetratricopeptide repeat 75 104 IPR019734 GO:0005515
Lele13g1882 251 SUPERFAMILY TPR-like 22 143 IPR011990 GO:0005515
Lele13g1882 251 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Lele13g1882 251 Coils Coil 141 170 - -
Lele13g1882 251 SMART tpr_5 71 104 IPR019734 GO:0005515
Lele13g1882 251 SMART tpr_5 31 66 IPR019734 GO:0005515
Lele13g1882 251 SMART tpr_5 105 138 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1882 Lele-ChrLele13 26642505 26644258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1882 31 142 Calmodulin-binding Proteins AT3G25230 33.333 4.50e-08 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1882 13 26642505 26644258 Lele07g1373 07 8348832 8352681 CCT
Lele13g1882 13 26642505 26644258 Lele08g1175 08 7395184 7402512 CCT
Lele13g1882 13 26642505 26644258 Lele15g0528 15 3088651 3089759 hybridization