Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1880 ATGACTACTCTCCCGTGCTCCGCCGCCGATCTCCAATCTCTTCTTGCCAACACAGCCAATTCTTCCGCCGCCGCCGATTACATTTGTAAACGTTTCGAAGATATTTCCAACAAGTTTGTTGATACTGCCTATGCCGTCGATAACACCTACCTTCTCTTTTCTGCCTACCTCGTGTTTGCGATGCAGCTGGGCTTCGCCATGCTGTGTGCTGGTTCTGTTCGAGCGAAGAACACCATGAACATTATGCTCACCAATGTGCTTGACGCTTCGACTGGTGGCATTTTCTATTACCTTTTCGGATTCGCCTTGTCTTATGGTTCGCCATCAAATGGGTTCATTGGGTATCACTTTTTCGGCCTCAACAAGTTCCCTTCGCCATCTTTTGATTACGGGTATTTTCTCTACCAATGGGCGTTTGCCATCGCCGCCGCTGGAATCACCAGTGGTTCGATTGCGGAGAGAACACAGTTCGTCGCCTATTTGATTTACTCATCATTCCTAACAGGATTGGTTTATCCCATAGTCTCTCACTGGTTCTGGTCTGCGGATGGTTGGGGCAGCGCTGCTCGCCCTGAAAATCTCTTATTCGGATCCGGGGTCATCGATTTCGCAGGCTCTGGCGTCGTCCACTTGGTGGGCGCCGTCGCCGGGTTCTGGGGTGCCTTCATTGAAGGCCCACGTATAGGAAGATTCGATCACGAAGGAAAACCTGTAGCCATGCGAGGACACAGTGGAACCTTGGTTGTTCTAGGCACATTCTTGTTATGGTTTGGATGGTACGGATTCAACCCAGGATCGTTCCTCACAATCATGAAGACCTATAACGATTCAGGTTCTTACTACGGGCAATGGAGTGCGATCGGCAGAACCGCCGTGACCACAACACTGGCTGGCTGCGCCGCGGCGCTGACCACCCTGTTCGGCAAACGCCTTCTGAGTGGACACTGGAATGTGACAGACGTCTGCAACGGGCTTCTCGGAGGATTCGCAGCCATAACGTCCGGTTGCTCTGTGGTGGATCCATGGGCAGCAATCTTGTGCGGATTTGTGGCGGCTTGGGTGCTCATTGGATTCAACATATTAGCAGAGAAGTTAAAGTACGATGATCCATTGGAAGCTGCACAGCTTCATGGAGGTTGTGGTTCATGGGGCATAATCTTCACAGCCCTGTTTGCAAGAAAAGAGTTTGTGAATGAGGTATATCCAGGTGTTCCTGGTAGGCCATATGGGTTGTTAATGGGAGGAGGAGGGAAGCTTTTGGGGGCACATGTTGTTCAGATTTTGGTGATAGTGGCTTGGGTTAGTGTAACAATGGGGACGCTTTTCTTCTTGCTTCATAAATTGGAGCTTTTGAGGATTTCACCAGATGAGGAAATGGCTGGATTGGATGTTACCAGTCATGGTGGATTGGCTTACGCGTATAATAACGAGGAGATTGAGCTTGCTCAAAAAAGTGCATTTGGGGCCATGAGGATGGGTTCTTCAGCTGTTTGA 1494 0.4993 MTTLPCSAADLQSLLANTANSSAAADYICKRFEDISNKFVDTAYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDASTGGIFYYLFGFALSYGSPSNGFIGYHFFGLNKFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSADGWGSAARPENLLFGSGVIDFAGSGVVHLVGAVAGFWGAFIEGPRIGRFDHEGKPVAMRGHSGTLVVLGTFLLWFGWYGFNPGSFLTIMKTYNDSGSYYGQWSAIGRTAVTTTLAGCAAALTTLFGKRLLSGHWNVTDVCNGLLGGFAAITSGCSVVDPWAAILCGFVAAWVLIGFNILAEKLKYDDPLEAAQLHGGCGSWGIIFTALFARKEFVNEVYPGVPGRPYGLLMGGGGKLLGAHVVQILVIVAWVSVTMGTLFFLLHKLELLRISPDEEMAGLDVTSHGGLAYAYNNEEIELAQKSAFGAMRMGSSAV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1880 497 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lele13g1880 497 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lele13g1880 497 SUPERFAMILY Ammonium transporter 44 453 - -
Lele13g1880 497 PANTHER AMMONIUM TRANSPORTER 17 468 - -
Lele13g1880 497 FunFam Ammonium transporter 28 487 - -
Lele13g1880 497 Gene3D Ammonium transporter AmtB like domains 25 488 IPR029020 -
Lele13g1880 497 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1880 Lele-ChrLele13 26637754 26639247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1880 4 478 Inorganic Solute Cotransporters AT4G13510 74.580 0.0 739