Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1879 ATGGCTACTCAGGGTCAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCATTGACTATTGAAGACATTCAGGTGGCCCCACCGCAGTCTGGTGAGGTTCGAGTCCAGATTCTTTACACCGCTCTCTGTCATACCGATGCTTACACTTGGAGCGGTCAGGATCCAGAAGGTCTCTTCCCGTGTATTCTTGGTCATGAAGCTGCCGGGATTGTAGAAAGTGTTGGACAAGATGTTACTGAGGTTCAGCCTGGAGATCATGTCATCCCCTGTTACCAGGCTGAATGTAGAGAATGCAAGTTTTGCAAATCTGGCAAAACAAACCTTTGTGGCAAAGTTCGTTCTGCCACTGGAGTTGGTGTCATGCTGAGTGACCGCAAGAGTCGTTTCTCTATTAATGGAAAGCCCATCTATCATTTTATGGGAACCTCAACTTTTAGTCAATACACTGTTGTTCATGATGTTAGCGTAGCTAAGATTGATCCACAAGCTCCTCTAGAGAAAGTTTGTCTTCTTGGATGTGGTGTCCCTACTGGTCTTGGAGCTGTCTGGAACACTGCAAAGGTTGAACCAGGTTCAATTGTAGCTATTTTTGGCCTTGGAACTATTGGGCTTGCTGTTGCAGAGGGTGCAAAAGCAGCTGGTGCATCACGGATCATTGGCATAGACCTTAACAGCAAAAAGTTTGATATAGCAAAGAACTTTGGCGTAACTGAATTTATTAATCCAAAAGATTACGACAAACCAATTCAGCAGGTCATAGTTGATCTCACAGACGGTGGAGTTGATTATAGTTTTGAATGCATTGGAAATGTCTCAGTGATGAGGTCTGCTTTGGAATGCTGCCATAAGGGCTGGGGGACATCGGTTATTGTGGGTGTTGCAGGATCAGGACAAGAAATATCAACTCGCCCCTTCCAGTTGGTGACTGGCCGTGTTTGGAAGGGAACTGCTTTTGGTGGCTTCAAGAGCCGCTCACAAGTTCCTATGCTTGTAGACAAGTACATGAAGAAGGAAATCAAGATCGATGAGTACATTACCCATAAATTAACTCTTTCGGAGATCAACAAAGCATTTGATCTTTTGCATGAAGGGGGATGCCTCCGATGCGTGCTTGCGGTGGATGTTTGA 1140 0.457 MATQGQVITCKAAVAWEPNKPLTIEDIQVAPPQSGEVRVQILYTALCHTDAYTWSGQDPEGLFPCILGHEAAGIVESVGQDVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTIGLAVAEGAKAAGASRIIGIDLNSKKFDIAKNFGVTEFINPKDYDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAGSGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPMLVDKYMKKEIKIDEYITHKLTLSEINKAFDLLHEGGCLRCVLAVDV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1879 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Lele13g1879 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Lele13g1879 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Lele13g1879 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Lele13g1879 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Lele13g1879 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Lele13g1879 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
Lele13g1879 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Lele13g1879 379 Gene3D - 13 372 - -
Lele13g1879 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Lele13g1879 379 Gene3D - 182 320 - -
Lele13g1879 379 Pfam Zinc-binding dehydrogenase 206 327 IPR013149 -
Lele13g1879 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1879 Lele-ChrLele13 26633010 26636438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1879 10 331 Monolignol Biosynthesis Gene Families AT1G72680 27.829 4.82e-18 82.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1189 06 7471130 7480201 Lele13g1879 13 26633010 26636438 CCT
Lele07g1381 07 8395248 8403696 Lele13g1879 13 26633010 26636438 CCT
Lele08g1183 08 7466075 7475286 Lele13g1879 13 26633010 26636438 CCT
Lele13g1879 13 26633010 26636438 Lele15g0530 15 3094996 3098046 hybridization
Lele13g1879 13 26633010 26636438 Lele16g0546 16 3034691 3036694 hybridization