Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1873 ATGTTGCCCAAAAGGCCGAAAAGCAACAGACCCGACCCAGATCCTTTAACCTTAGCCGAGAAAGACCGAAAAAGACCCGGTAAAAATGTCGTTATCATCTCACAGCTCGAGTCGTCAATTTGCGGCTGGTGGGCCCCGCCGTACATCGAGCTCCAGCATGAATCGCCAGCAGAAGCATTTCACGTCCATTCTGTTTCTCAGAAGTACGGGTCTCTCGCAACTCTCACTCTCAAGCTGAATTCTGAGCTGTTGTCAACGACCACCATGTTGAAGCCGCTGTATCTTGCTGCATCCCACGCCGTGCCAACGACGTTTCGTGGCAGAAATTTCCCCGTTAGAATGTCCTCTGATGCCCCTCCTCAGCCCCCCGAAAGCCGCGTCGTCGTGGGCTGTGGAATGACTACAGTAGATTTCCTGGCCACTGTGGATGCATATCCCAAGCCAGACGACAAGGTCAGAACCACCAGCTTCAAGATTCAAGGAGGTGGCAATGCGGGTAATGCTTTAACTTGTGCTGCTCGCCTGGGGTTAAAGCCAAAGTTGATCTCCAAGGTTTCTGATGATGCCCAAGGCAGGGGCATATTGAAGGAGCTAGAAGCTGATGGGGTGGATACTTCCTTTTTTGTTGTCTCCAAGGACGGTAGTTCAACACTTTCATACGTGCTTGTGGACAACCAAACAAAATCTCGCACATGCATTTATACCCCTGGAGACCCTCCCATGATGCCAACTGACCTGTCCCAATCAATCCTATTATCTGCATTTAATGAAGCAAGATTAATTTATTTTGATGGATCATCAACTGAAACTGCACTATTTGTCGCACATGAGGCAGACCGCAATAACATACCTATTTTAGTTGAGGCAGAATCAGTGAGGGAAGGATTGGATGAGCTCCTGGGTCTTGCTGATTATGCTGTTTGCTCTGCAAGGTTTCCGCAGGCGTGGACCCAAGCACCATCTATTCCAAGTGCACTGGTTTCTATGCTTTTAAGATTGCCAAATATCAAATTTGTGATCGTTACTCTGGGTGAAGATGGATGTATAATGCTGGAAAGAAGCATAACTGAGGGTACTGACATAGAAGAAAGGGATGTGGACAATGTAATAGAGTCCCTATATAAAGAGAAAGATGATAGTCTGATTATCCCAACTTGTATATCATCGACTATGACAAAATTAAGAGCAGATGGAATTGGGACTCTGTGTGGACGTTTATTTGTTGGAACAGCAGAGAAGATACCGGCTTGTGAACTGACCGATACAACTGGTGCTGGGGATGCATTTATTGGAGCTATTCTTTATGCTATCTGTGCAAACATGTTACCTGAGAAAATGTTGCCATTCGCCTCTCAAGTGGCAGCTGCCAAGTGTAGAGCTTTGGGTGCTCGAACAGGTCTTCCTCACCACACGGATCCACGCTTGGCATCTTTTTTAAGCTAG 1443 0.4692 MLPKRPKSNRPDPDPLTLAEKDRKRPGKNVVIISQLESSICGWWAPPYIELQHESPAEAFHVHSVSQKYGSLATLTLKLNSELLSTTTMLKPLYLAASHAVPTTFRGRNFPVRMSSDAPPQPPESRVVVGCGMTTVDFLATVDAYPKPDDKVRTTSFKIQGGGNAGNALTCAARLGLKPKLISKVSDDAQGRGILKELEADGVDTSFFVVSKDGSSTLSYVLVDNQTKSRTCIYTPGDPPMMPTDLSQSILLSAFNEARLIYFDGSSTETALFVAHEADRNNIPILVEAESVREGLDELLGLADYAVCSARFPQAWTQAPSIPSALVSMLLRLPNIKFVIVTLGEDGCIMLERSITEGTDIEERDVDNVIESLYKEKDDSLIIPTCISSTMTKLRADGIGTLCGRLFVGTAEKIPACELTDTTGAGDAFIGAILYAICANMLPEKMLPFASQVAAAKCRALGARTGLPHHTDPRLASFLS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1873 480 Gene3D - 126 465 IPR029056 -
Lele13g1873 480 MobiDBLite consensus disorder prediction 1 24 - -
Lele13g1873 480 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 113 479 - -
Lele13g1873 480 SUPERFAMILY Ribokinase-like 128 470 IPR029056 -
Lele13g1873 480 Pfam pfkB family carbohydrate kinase 412 468 IPR011611 -
Lele13g1873 480 Pfam pfkB family carbohydrate kinase 131 353 IPR011611 -
Lele13g1873 480 PRINTS Ribokinase signature 157 176 IPR002139 GO:0016301
Lele13g1873 480 PRINTS Ribokinase signature 130 151 IPR002139 GO:0016301
Lele13g1873 480 PRINTS Ribokinase signature 339 350 IPR002139 GO:0016301
Lele13g1873 480 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 421 434 IPR002173 GO:0016773
Lele13g1873 480 CDD ribokinase_group_B 127 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1873 Lele-ChrLele13 26598546 26603051 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1873 13 26598546 26603051 Lele05g1315 05 8241584 8247532 CCT
Lele13g1873 13 26598546 26603051 Lele06g1176 06 7356773 7361083 CCT
Lele13g1873 13 26598546 26603051 Lele07g1364 07 8289353 8293534 CCT
Lele13g1873 13 26598546 26603051 Lele08g1167 08 7342178 7346701 CCT
Lele13g1873 13 26598546 26603051 Lele15g0536 15 3128689 3133700 hybridization
Lele13g1873 13 26598546 26603051 Lele16g0549 16 3057727 3060526 hybridization