Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1871 ATGGTTGCTGCTGTCAATCCTGTTGTTGGGTCCCATGTTTGGGTAGAGGATCCTGATGTATCTTGGATTGATGGTGAGGTTTTGGAGGTTAATGGAGAAGAAATCAAAGTCCTTTGCACTTCAGGGAAGACGGTGGTTGTTAAAGCTTCCAGTATTCATCCTAAAGATACTGAGGTGCCACCATGTGGAGTGGATGATATGACGAAGCTTGCTTACCTGCATGAACCTGGAGTCCTGGACAACCTGAGAATGAGATATGATATAAATGAAATCTATACTTACACCGGAAATATATTGATTGCTGTGAACCCTTTTACAAAGCTTCCTCACCTTTATGATAGCCATATGATGGCACAATATAAAGGGGCAGCTTTTGGTGAGCTGAGTCCACATCCATTTGCTGTTGCAGATGCTGCATATAGGCTTATGGTCAATGAGGGGATCAGCCAATCAATATTGGTCAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGTACCAAATTACTAATGCGTTATCTTGCTTACATGGGAGGACGAGCAGCTGCTGAAGGTAGGACTGTTGAGCAGAAAGTCTTGGAGTCTAATCCAGTTTTGGAAGCCTTTGGCAATGCGAAGACTGTTAGGAACAACAATTCAAGTCGCTTTGGTAAATTCGTGGAAATTCAATTTGATCAGATGGGGAGAATTTCAGGAGCTGCGATAAGAACTTATCTTCTGGAAAGGTCACGTGTTTGCCAAGTGTCAGATCCAGAGAGAAATTATCACTGTTTCTACATGCTCTGTGCCGCACCTCCTGAGGATGTTAAGAAGTACAAGTTGGGAAAGCCAGCAGCATTTCATTATCTAAACCAAACAAATTGCTTTGAGATAGAAGGGCTTGATGAAGCTAAAGAATATAGTGCCACAAGGAGAGCTATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCGTGTGGTGGCTGCAATTTTGCATCTTGGAAACATTGAATTTGCCAAAGGGAAGGAAATAGACTCGTCTGTGCCCAAGGATGAAAAGTCTAGGTTCCATCTGCAAACTGCTGCTGAGCTTTTCATGTGTGATGCAAAGGCACTTGAAGACTCTCTTTGCAAGCGTGTAATTGTTACTCGGGATGAGACAATCATAAAATGTTTGGATCCAGATGCTGCTGCACTCAGCCGAGATGCTTTGGCTAAAATTGTGTACTCTAGACTGTTTGATTGGCTGGTGGAAAAAATTAATAGTGCAATTGGTCAAGATCCTGATTCAAAGTCCCTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAAAATAACAGTTTTGAGCAATTTTGTATTAATTTGACAAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTTAAAATGGAGCAAGAAGAATACAAAAAAGAGGCGATTGATTGGAGTTACATTGAATTTGTTGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGAGGTATTATTGCTCTTTTGGACGAAGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCTCAAAAACTGTATCAGACATTCAAAAACCATAAGAGGTTCAGCAAGCCCAAATTATCACTCAGTGACTTCACAATATTGCATTATGCTGGTGATGTTAATTATCAAACTGAATTGTTCCTGGACAAGAACAAAGATTATGTTGTTGCGGAACATCAGGCACTTCTTAATGCTTCCAAATGCCCCTTTGTATCGGGTTTGTTTCCCCCGGCCCCTGAAGAATCATCCAATAAATCGAAGTTCTCTTCAATAGGTTCTCGATTCAAGCAACAATTGCAATCGCTACTTGAAATTCTCAGTGCTACTGAGCCACACTACATTCGGTGTGTGAAACCCAATAATTTGCTCAAGCCATCAATTTTTGAGAATAAAAATGTTTTGCAGCAACTGCGTTGTGGGGGAGTTATGGAGGCGATAAGGATTAGCTGTGCTGGATATCCTACTAGAAAAACCTTTGATGAGTTTGCAGACAGATTTGGCCTTCTTTCACCTGAAGCTATGTATGGAAGTCCTGATGAGATCACTGTTTGCAAGAGGATTCTAGAGAAGGTTGGACTTCAAGGCTACCAGATCGGTAGAACAAAGGTGTTTCTTCGAGCTGGGCAAATGGCAGAACTTGATACCCGTAGGACTGAGATCTTGGGAAAGTCTGCAAGCATTATTCAGAGGAAAGTTCGCTCCTTCTTGGCACGCCGAAGTTTTGTCTTGATTCACTTTTCTGCTATACAGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCATATTTATGAGGGAATGCGGCAGGAGGCTTCTAGTGTGCAAATTCAGAAGAATTTCCGCATGCATATTGCTAGGAAGGCATACAAAGATTTGTATGGCTCTGCCATTTCTATTCAGACTGGTATGAGGGGGATGGTTGCCCGTTCTGAACTACGCTTTAGGAGGGAGACCAGAGCGGCAATTGTTATACAGAGCCATTGCCGGAAATACTTGGCACATCATCATTTTATGGCCTTAAAGAAAGCAGCAATTAGAACACAGTGTGCATGGAGAGGAAAAGTTGCTCGGCGTGAATTACGAAAGCTCAAGATGGCTGCAAGGGAAACTGGAGCTCTGCAAGCTGCCAAAAATAAGCTCGAAAAGCAAGTTGAAGATCTTACATTGAGGTTGCAGTTGGAGAAACGATTGAGGGTTGACATGGAAGAAGCAAAAGCACAAGAAAATGAACGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAGACTAAAGTACTGCTTGAAAAGGAGCGTGAGACTGCAAAAAGGGAAGCAGAGAGAGCTCCTGTGATACAGGAGATTCCTGTTGTTGATAATGCATTGCTGGAGAAGCTCACTAGTGAGAATGAGAAACTCAAGACCTTGGTGAGTTCACTTGAAAAGAAAATCGATGAAACCGAGAAAAGGTTTGAAGAGGCAAACAAAATTAGTGAAGAACGAATGAAGCAAGCATTGGAGGCAGAATCAAAGATAATTCAGTTGAAGACTGCTATGCAAAGGCTTGAAGAAAAATTTTTCGATGTTGAATCTGAAAATCAGATTCTTAGGCAACAATCTTTGCTAAACTCGAATGTAAAGAAAATGTCAGAGCACCTCTCAACAACTCCTTCAGATGAGAAGCTGGAGAATGGTCACCATGTGATGGAAGAGGAAAAAGTTGTTGAAGCACAGGCTTTCAATACACCAGTTAAAAAGTTTGGTACAGAATCTGATAGCAAATTTAGGAGATCATACATTGAACGTCAGCATGAGAATGTTGAAGCACTAATCAACTGTGTTAAAAAGAATACTGGGTTTATTCATGGGAAGCCTGTTGCTGCATTTACCATTTACAAATGCCTTCTCCACTGGAAATCATTTGAAGCTGAGAGGACAAGTGTATTTGATCGCCTCATCCAGATGATTGGTTCTGCAATTGAGAATCAAGATGACAATGATCTTATGGCTTATTGGCTGACAAATACATCCACACTATTGTTTTTGCTCCAAGAAAGTTTGAAATCTGGCAGTACAAGTGATGCAACTCCAGCTAAAAAACCACCAAATCCAACATCCCTTTTTGGAAGAATGGCTATGGGTTTTCGCTCATCCCCTTCATCTGCCAACCTTCCTGTCCCTGCATTGGACTTCGTCCGCAAGGTAGAGGCTAAATACCCTGCGTTACTTTTTAAGCAGCAGCTCACAGCATATGTGGAGAAAATATATGGTATCATTCGAGACAACTTGAAGAAGGAGTTAACACCATTCCTGGCATTATGTATCCAGGCACCTAGAACTGCAAAGGGAGTGTTACGGTCTGGACGATCATTTAGTAAAGACTCTCCTATGGGTCACTGGCAGAGTATTATTGAATCCCTCAACACCCTCCTCTGTACACTCAAGGAGAATTTTGTACCTCCTGTTCTCATCCAAAAGGTCTATACTCAAACATTCTCATATATTAATGTACAACTCTTCAATAGTCTTCTTCTTCGCCGTGATTGTTGCACATTCAGCAATGGGGAATATGTAAAAGCTGGATTAGCAGAATTGGAATTATGGTGCTGCCAAGCAAAGGAGGAGTATGCTGGATCATCTTGGGATGAGCTGAAGCACATAAGACAGGCAGTCGGATTCTTGGTCATTCATCAGAAGTACAGGATTTCCTATGACGAAATTACCAATGATTTGTGCCCTATCCTGAGTGTCCAGCAGCTGTATAGAATATGTACACTCTACTGGGATGCTAATTATAATACTCGAAGTGTATCACCAGATGTCCTTTCAAGTATGAGGGTGCTTATGGCTGAGGACTCCAATAACGCTCAAACGGATTCTTTCTTGCTGGATGATAATTCCAGTATCCCTTTCTCCGTGGATGACCTCTCCATATCACTGCAATCCAAGGAATTCTCAGACATGAAAGCAGCTGATGAACTTCTTGAGAATCCAGCCTTTCAATTTTTAAATGAGTAG 4545 0.4141 MVAAVNPVVGSHVWVEDPDVSWIDGEVLEVNGEEIKVLCTSGKTVVVKASSIHPKDTEVPPCGVDDMTKLAYLHEPGVLDNLRMRYDINEIYTYTGNILIAVNPFTKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMVNEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQMGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGKPAAFHYLNQTNCFEIEGLDEAKEYSATRRAMDVVGISSEEQDAIFRVVAAILHLGNIEFAKGKEIDSSVPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETIIKCLDPDAAALSRDALAKIVYSRLFDWLVEKINSAIGQDPDSKSLIGVLDIYGFESFKNNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEAIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSLSDFTILHYAGDVNYQTELFLDKNKDYVVAEHQALLNASKCPFVSGLFPPAPEESSNKSKFSSIGSRFKQQLQSLLEILSATEPHYIRCVKPNNLLKPSIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFADRFGLLSPEAMYGSPDEITVCKRILEKVGLQGYQIGRTKVFLRAGQMAELDTRRTEILGKSASIIQRKVRSFLARRSFVLIHFSAIQIQAACRGQLARHIYEGMRQEASSVQIQKNFRMHIARKAYKDLYGSAISIQTGMRGMVARSELRFRRETRAAIVIQSHCRKYLAHHHFMALKKAAIRTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDMEEAKAQENERLQSALQEMQLQFKETKVLLEKERETAKREAERAPVIQEIPVVDNALLEKLTSENEKLKTLVSSLEKKIDETEKRFEEANKISEERMKQALEAESKIIQLKTAMQRLEEKFFDVESENQILRQQSLLNSNVKKMSEHLSTTPSDEKLENGHHVMEEEKVVEAQAFNTPVKKFGTESDSKFRRSYIERQHENVEALINCVKKNTGFIHGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNDLMAYWLTNTSTLLFLLQESLKSGSTSDATPAKKPPNPTSLFGRMAMGFRSSPSSANLPVPALDFVRKVEAKYPALLFKQQLTAYVEKIYGIIRDNLKKELTPFLALCIQAPRTAKGVLRSGRSFSKDSPMGHWQSIIESLNTLLCTLKENFVPPVLIQKVYTQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQTDSFLLDDNSSIPFSVDDLSISLQSKEFSDMKAADELLENPAFQFLNE 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1871 1514 CDD MYSc_Myo11 76 720 IPR036018 -
Lele13g1871 1514 Coils Coil 1014 1048 - -
Lele13g1871 1514 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Lele13g1871 1514 Gene3D - 439 623 - -
Lele13g1871 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 883 IPR027417 -
Lele13g1871 1514 Coils Coil 972 1006 - -
Lele13g1871 1514 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 FunFam Class V myosin 439 580 - -
Lele13g1871 1514 SMART DIL_2 1335 1442 IPR002710 -
Lele13g1871 1514 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Lele13g1871 1514 Gene3D - 785 833 - -
Lele13g1871 1514 Gene3D - 735 784 - -
Lele13g1871 1514 Gene3D - 834 882 - -
Lele13g1871 1514 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Lele13g1871 1514 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 FunFam unconventional myosin-Va 834 881 - -
Lele13g1871 1514 Gene3D - 667 733 - -
Lele13g1871 1514 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 ProSiteProfiles IQ motif profile. 831 857 IPR000048 GO:0005515
Lele13g1871 1514 Coils Coil 877 950 - -
Lele13g1871 1514 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Lele13g1871 1514 ProSiteProfiles Dilute domain profile. 1159 1460 IPR002710 -
Lele13g1871 1514 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele13g1871 1514 FunFam Myosin heavy chain 252 307 - -
Lele13g1871 1514 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Lele13g1871 1514 PANTHER MYOSIN 54 1448 - -
Lele13g1871 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 788 IPR027417 -
Lele13g1871 1514 SMART iq_5 757 779 IPR000048 GO:0005515
Lele13g1871 1514 SMART iq_5 734 756 IPR000048 GO:0005515
Lele13g1871 1514 SMART iq_5 853 875 IPR000048 GO:0005515
Lele13g1871 1514 SMART iq_5 805 827 IPR000048 GO:0005515
Lele13g1871 1514 SMART iq_5 782 804 IPR000048 GO:0005515
Lele13g1871 1514 SMART iq_5 830 852 IPR000048 GO:0005515
Lele13g1871 1514 CDD MyosinXI_CBD 1110 1483 IPR037975 GO:0007015
Lele13g1871 1514 Gene3D Kinesin motor domain 65 662 IPR036961 -
Lele13g1871 1514 Gene3D - 252 310 - -
Lele13g1871 1514 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Lele13g1871 1514 Pfam IQ calmodulin-binding motif 761 778 IPR000048 GO:0005515
Lele13g1871 1514 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Lele13g1871 1514 Pfam IQ calmodulin-binding motif 786 804 IPR000048 GO:0005515
Lele13g1871 1514 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Lele13g1871 1514 FunFam unconventional myosin-Va 785 833 - -
Lele13g1871 1514 FunFam Myosin 2 312 424 - -
Lele13g1871 1514 Pfam DIL domain 1336 1439 IPR002710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1871 Lele-ChrLele13 26569553 26588836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1871 1 1513 Myosins gene family AT5G43900 75.165 0.0 2363
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1871 13 26569553 26588836 Lele13g1871 13 26569553 26588836 ECH
Lele13g1871 13 26569553 26588836 Lele15g0538 15 3143432 3158338 hybridization
Lele13g1871 13 26569553 26588836 Lele16g0551 16 3068309 3095917 hybridization