Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1856 ATGGTGGGCATCGTCTCATTGATAACAGGGAGGGCAGGCCCAAGTGGGTTTGGTTCTGCTTCAACTGCGGAGGAAGTCACCAAAGGAATTGATGCCTCCAATCTCACTGCCATTATCTATGGAGGAGCAAGTGGGATTGGCTTAGAGACAGCAAGAGTATTAGCTCTTCGAAAGTTTCATGTGATCATTGCTGCGAGGAATATGGAAGCCTGCAAGAAAGCAAAGAAGCTTATTCTTGACCAAAACCAGTCTGCTCGTATCGATATACTGAAACTTGACCTTTCCTCTGCCAAGTCCATCGGAGCATTTGTTGATAACTTCTCATTGGCCTTTCTTTTCAGAAACAATGATGGAGTTATGTTCTGCCCTTTCCAACTCTCACAGGATGGAATTGAGATGCAGTTCGCTACAAATCATATCGGTCATTTCCTCTTGACCAATCTTCTTCTTGACAAGATGAAACAAACTGCAAAAGCCACCGGAATTGAGGGAAGGATCGTGAATCTCTCATCAGTTGCCCATAACTATACTTACTTGAAGGGGATTCGATTTGAGAAGATCAATAATCGAATTGGTTCTTCAAATCATGCACAGGAAGAAGGCGTGAACATTACAGCCAACTCGGTCCACCCAGGAGTGATAATGACTCCTCTCATGAGACATTCTTCCTTCACTATGCGTAAGTTTGTGTCTCCTGCATTTCATGTGGAAGCAGCCACAACATGCTATGTTGCTCTGCACCCCAGTGTGAAAGGTGTGATTGGGAAATACTTTCAGGATTGCAATGTGCATAAGCCAAGTTCATATGCCAGAAACCAAGCGTTAGCCATGAAATTCTGGGATTTCAGCAACACGCTGATCAATTCCCTTTCCAAGGCTTAG 882 0.4422 MVGIVSLITGRAGPSGFGSASTAEEVTKGIDASNLTAIIYGGASGIGLETARVLALRKFHVIIAARNMEACKKAKKLILDQNQSARIDILKLDLSSAKSIGAFVDNFSLAFLFRNNDGVMFCPFQLSQDGIEMQFATNHIGHFLLTNLLLDKMKQTAKATGIEGRIVNLSSVAHNYTYLKGIRFEKINNRIGSSNHAQEEGVNITANSVHPGVIMTPLMRHSSFTMRKFVSPAFHVEAATTCYVALHPSVKGVIGKYFQDCNVHKPSSYARNQALAMKFWDFSNTLINSLSKA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1856 293 Pfam short chain dehydrogenase 36 221 IPR002347 -
Lele13g1856 293 PANTHER RETINOL DEHYDROGENASE 14 287 - -
Lele13g1856 293 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Lele13g1856 293 PRINTS Glucose/ribitol dehydrogenase family signature 202 219 IPR002347 -
Lele13g1856 293 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lele13g1856 293 Gene3D - 25 290 - -
Lele13g1856 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 266 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1856 Lele-ChrLele13 26464271 26467587 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1161 06 7210157 7216213 Lele13g1856 13 26464271 26467587 CCT
Lele07g1345 07 8131965 8134821 Lele13g1856 13 26464271 26467587 CCT
Lele08g1153 08 7212649 7216152 Lele13g1856 13 26464271 26467587 CCT
Lele05g1296 05 8072172 8074974 Lele13g1856 13 26464271 26467587 CCT
Lele13g1856 13 26464271 26467587 Lele15g0555 15 3274311 3275877 hybridization
Lele13g1856 13 26464271 26467587 Lele16g0569 16 3206358 3207942 hybridization