LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g1854	ATGGGAGACGGTGCAGTTTGCGTCGAATTACCCGCAGATAGAACAGATGAAAACGATGAGATATCAAGAACGGACCTGAAGAGGGACTGCCAATGTCTTACTGATACTGAAGTTGTCACCTCCCCGAATAAGAAACAAGCAAAAGAAATCTCAAACGATGACGTGCGCTCTGAAGTTTCTAATCCCAAAATTTCTTCGAAAGAGAATGTATTAGCATTTCAAGATGTTAGTAGCCAGCCCGGCGAGTTGGCAAATACAAATCAAGCAGAGTGTGGAGAAGTAACATCTACTTGTTTGGAGAATTCAAGTTCGGATGAGACCTTGGTTGATGGAGGGGTTGATCATAATACTATTTCTCAGAACGATAAGGGCGTGAGCAGTGCTGAAATGACGTCCCGTGTTGTACTGGAAATTCCCAAGCATGCCAGTTCATCTGGAATCAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGAATATGATTATCAGCCACTTGCTAGTACTAATAGGAATCCTTACAACGAAGAGCCAAGTTCTGATTATAAGTCGGGGATGTTAGCAAGTTCGTGTGGGATGGAATATGTTCAAGCTGGTGATTTTAACTTGTACGCTCCAAATATGGAGCTGAAAATGTCAAAGAAGGTAGTTCCTAGCTGTTATCCTACAAATGTTAAAAAACTGCTAGCAACTGGTATTCTTGATGGAGCTCGGGTGAAGTACATTTATACTCATAGCGCAGGAAAGATTGAGCTGCCGGGGATTATTCAGGGTGGTGGATATATGTGTGGCTGCTCGTTGTGCAGCTTCTCCAGAGTTCTAAGTGCGTATGAGTTTGAGCAGCATGCTGGTGCCAAGACTAGGCATCCAAATAATCACATATTCCTGGAAAACGGAAAACCAATTTATAGTATTATACAGGAAATGAAAATTGCTCCGCTCAGCTTATTAGATGAGGTTATAAAGAATGTTGCTGGTTCATCTGTCAATAAAGATTCCTTCGAGGTTTGGAAAGCAAGTCTTTTGCAAAGCAATGGGCAGGTTGAGGCAGAAAAGAAGTTTAACTCCATGCTTGCTGGCATGCCTCATACAAACATAAGTGGATTTGTAGATGGTATGAGCTACATGTCCTGTTCAGATGTTCTGAGTCCTGTTGAGCAGCAAAGTCATGTGAAGCAGACAACTGACGAGAGGAAACATGTGGTGAAAAAATCAAGCTCCCATACTTCTAACTCAGGTCTACAGCAAAAGAAAACTGCAGATGGTTGCAATAAGAGAAGGGATAATGATTTGCATAGGCTACTATTTATGCCAAATGGACTACCAGACGGTGCTGAATTGGCTTACTATGTCAAGGGACAGAAACTACTTGGAGGTTACAAACAGGGAAATGGAATAGTTTGTGGTTGTTGCGATAGAGAGATAAGCCCTTCACAGTTTGAAGCTCATGCTGGGATGGCTGCCCGGCGTCAACCTTATCGCCATATATATACTTCCAACGGATTAACACTTCATGATATAGCCCTCTCATTAGCAAATGGTCAAAACCTTACCACGGGAGATAGTGATGACATGTGTGCAGTATGCGGAGATGGAGGGGATTTGATTCTTTGCAATGGATGCCCTAGGGCTTTTCATGCAGTTTGCTTAGGTTTACAGGGTGCTCCTGAAAGCTGTTGGCTTTGTCAAACTTGTAGAGATATTTCTGGCTGCAGCAGATTATCTTCTACTGCAAGGCCAATTAAGATAAGGTTGACCCGGGTTGTTAAAGCGCCAGAATTTGAGATGGGTGGTTGTGTTGTTTGTAGGGAGCATGATTTTAGTGTCTCTAAATTTGACGAGCGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTCGCTTGTTTGCGGGACAGTGGGCTATGTGAGTTGGAAGAATTGCCTAAGGACAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCCCTACAAAATTCAGTTTCTTCTGGAGCAGAGATTATACCAGCTTCCTTGTCAGCCCTAATAAATAGGAAGCGTGAGGAGAGGGGCTTACCTATTGATGGAGGAGGCATTGATGATATCCAATGGCGAATTCTAAGCGGAAAAAGTCGTTATCCAGAACATTTACCATTACTTTCCCGGGTGGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAGTCTCTGGTCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGGATGTATTGTGTTGTCTTAATAGTGAAATCTGTTGTTGTATCTGCTGGATTACTTAGGATTTTTGGATGTCATGTTGCCGAGCTTCCAATGGTTGCTACAAGTAGAGAACATCAAGGAAAAGGATATTTTCAAGTGTTATTCTCTTGCATAGAGAAGTTGCTGTTGTCCCTGAAGGTGGAAAAGTTGGTGCTTCCTGCAGCTGAGGATGCTGAATCGATTTGGACTAGAAAATTAGGCTTCCGAAAGCTGACTGAAGACCAGTTATCCAAATATCTCAGAGAGGTGCAGCTCACCCTCTTTAATAAGACTTCGATGCTGGAGAAGACACTGCAGCTGGCGATGGAATGA	2616	0.4266	MGDGAVCVELPADRTDENDEISRTDLKRDCQCLTDTEVVTSPNKKQAKEISNDDVRSEVSNPKISSKENVLAFQDVSSQPGELANTNQAECGEVTSTCLENSSSDETLVDGGVDHNTISQNDKGVSSAEMTSRVVLEIPKHASSSGIRKITFKFSKKKEEYDYQPLASTNRNPYNEEPSSDYKSGMLASSCGMEYVQAGDFNLYAPNMELKMSKKVVPSCYPTNVKKLLATGILDGARVKYIYTHSAGKIELPGIIQGGGYMCGCSLCSFSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIQEMKIAPLSLLDEVIKNVAGSSVNKDSFEVWKASLLQSNGQVEAEKKFNSMLAGMPHTNISGFVDGMSYMSCSDVLSPVEQQSHVKQTTDERKHVVKKSSSHTSNSGLQQKKTADGCNKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAVCLGLQGAPESCWLCQTCRDISGCSRLSSTARPIKIRLTRVVKAPEFEMGGCVVCREHDFSVSKFDERTVIICDQCEKEYHVACLRDSGLCELEELPKDKWFCCDDCNRIYVALQNSVSSGAEIIPASLSALINRKREERGLPIDGGGIDDIQWRILSGKSRYPEHLPLLSRVAAIFRECFDPIVAVSGRDLIPVMVYGRNISGQEFGGMYCVVLIVKSVVVSAGLLRIFGCHVAELPMVATSREHQGKGYFQVLFSCIEKLLLSLKVEKLVLPAAEDAESIWTRKLGFRKLTEDQLSKYLREVQLTLFNKTSMLEKTLQLAME	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g1854	871	SUPERFAMILY	FYVE/PHD zinc finger	511	566	IPR011011	-
	Lele13g1854	871	ProSiteProfiles	Zinc finger PHD-type profile.	596	657	IPR019787	-
	Lele13g1854	871	FunFam	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein	513	591	-	-
	Lele13g1854	871	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	513	595	IPR013083	-
	Lele13g1854	871	Gene3D	-	697	865	-	-
	Lele13g1854	871	ProSiteProfiles	Zinc finger PHD-type profile.	523	568	IPR019787	-
	Lele13g1854	871	ProSitePatterns	Zinc finger PHD-type signature.	526	565	IPR019786	-
	Lele13g1854	871	PANTHER	AUTOIMMUNE REGULATOR	19	865	-	-
	Lele13g1854	871	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	750	840	IPR016181	-
	Lele13g1854	871	FunFam	PHD zinc finger protein	597	657	-	-
	Lele13g1854	871	MobiDBLite	consensus disorder prediction	42	63	-	-
	Lele13g1854	871	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	596	657	IPR013083	-
	Lele13g1854	871	Pfam	Tify domain binding domain	459	508	IPR032308	-
	Lele13g1854	871	Pfam	Tify domain binding domain	254	309	IPR032308	-
	Lele13g1854	871	MobiDBLite	consensus disorder prediction	390	425	-	-
	Lele13g1854	871	SUPERFAMILY	FYVE/PHD zinc finger	597	652	IPR011011	-
	Lele13g1854	871	ProSitePatterns	Zinc finger PHD-type signature.	599	654	IPR019786	-
	Lele13g1854	871	SMART	PHD_3	598	655	IPR001965	-
	Lele13g1854	871	SMART	PHD_3	525	566	IPR001965	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g1854	Lele-ChrLele13	26452117	26459574	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g1854	1	866	PHD Transcription Factor Family	AT3G53680	53.559	0.0	902

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g1854	13	26452117	26459574	Lele15g0557	15	3280602	3288019	hybridization
	Lele13g1854	13	26452117	26459574	Lele16g0570	16	3209443	3218900	hybridization