Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1843 ATGGAGTCTCTGGCCAGACTGCATCACTGTCGCCAGCCGCTTCCCTTCTCATTCAATCATCTTCCTTTTTCGCTATCAAGTCCCATATCTTCTGTCTGCTTATGGCCTCTACCACCCCGTGTTTCGCCGTCGCAATTCTCGTCTTCCTCTTTCAGATCATCGTCCATTAGAGCCTCATCCTGGCCGTCAGAGTCGCTCTCTCACTCTGCTTCCCGTAGACCTAGAACCACACTACCGCAGTCGTTTCAAACCCTAAACTCCCTTTTCTCACCCGTCATCCGAACCACCCGCACCATCATAACAGCGGCTATGTTTTTCTACATGCGTCTTCACCACAAGCCCGCCATTGCAGCGCCGCTTGAAACGCCCACGGTGGAGTCGAGTACCGAGTCGATGGAAAATTCTTCGAAAGACGAAAATCAAAGAACTGTTGAAGATAAATTAAGCAACAATCCCAATGATACTGGAGCTCTTCGGTCGCTTATCGAGGAAAAGGTCAGAGCGCGCAAAATTGAAGAAGCAATCCAGGCTATAGACCGTTTAATTGAGCTTGAACCGGAAGAGTTTGAGTGGCCACTGCTGAAGGCTCACATGTATGTTTACAATGGTGACTACGAATCAGCTAAAGAGAAGTTCGAAGAAATTCTAACGAAAGATCCCTATCGTGTCGAGGCCTATCATGGCCTAGTAATGGCAGCTTCGGAATCGGATAAACCGTTGGAGGATTTGTCGAAGAGGGTTGAAGAAGCAGTGGAATTGTGCAAAAACCAAAAGCGGGAATCGGAGGTCAGGGATTTGAGGCTCTTGATTGCGCAGATTAAAGTCATGGAGGGAGAATTTAATGATGCGCTGAAGGCATATCAGGAGCTTGTAAAGGAAGAACCAAAGGATTTCAGGCCTTACTTATGTCAGGGTATCATATATACTATTCTAAGTAAGAAAGATGAAGCCGACAAACAATTTGACAAGTTCCGGAGGCTTATCCCTAAGAATCATCCTTACAGGGAGTATTTTGAGGATAATATGTTTGAAATGAATGTAATTTCACGGAAGGCAGAGAGGGAGGGAGCAGGTACGGGGAACTGA 1086 0.4659 MESLARLHHCRQPLPFSFNHLPFSLSSPISSVCLWPLPPRVSPSQFSSSSFRSSSIRASSWPSESLSHSASRRPRTTLPQSFQTLNSLFSPVIRTTRTIITAAMFFYMRLHHKPAIAAPLETPTVESSTESMENSSKDENQRTVEDKLSNNPNDTGALRSLIEEKVRARKIEEAIQAIDRLIELEPEEFEWPLLKAHMYVYNGDYESAKEKFEEILTKDPYRVEAYHGLVMAASESDKPLEDLSKRVEEAVELCKNQKRESEVRDLRLLIAQIKVMEGEFNDALKAYQELVKEEPKDFRPYLCQGIIYTILSKKDEADKQFDKFRRLIPKNHPYREYFEDNMFEMNVISRKAEREGAGTGN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1843 361 Pfam Tetratricopeptide repeat 267 296 IPR019734 GO:0005515
Lele13g1843 361 PANTHER TRANSMEMBRANE PROTEIN 209 333 - -
Lele13g1843 361 SMART tpr_5 189 222 IPR019734 GO:0005515
Lele13g1843 361 SMART tpr_5 264 297 IPR019734 GO:0005515
Lele13g1843 361 SMART tpr_5 298 331 IPR019734 GO:0005515
Lele13g1843 361 SMART tpr_5 155 188 IPR019734 GO:0005515
Lele13g1843 361 MobiDBLite consensus disorder prediction 122 156 - -
Lele13g1843 361 Gene3D Tetratricopeptide repeat domain 115 347 IPR011990 GO:0005515
Lele13g1843 361 Pfam Tetratricopeptide repeat 194 250 - -
Lele13g1843 361 ProSiteProfiles TPR repeat profile. 264 297 IPR019734 GO:0005515
Lele13g1843 361 Coils Coil 240 260 - -
Lele13g1843 361 SUPERFAMILY TPR-like 164 332 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1843 Lele-ChrLele13 26395998 26397083 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1140 06 7079454 7080278 Lele13g1843 13 26395998 26397083 CCT
Lele08g1132 08 7089831 7090631 Lele13g1843 13 26395998 26397083 CCT
Lele05g1277 05 7953651 7959275 Lele13g1843 13 26395998 26397083 CCT
Lele13g1843 13 26395998 26397083 Lele15g0565 15 3339144 3340229 hybridization
Lele13g1843 13 26395998 26397083 Lele16g0579 16 3255076 3256149 hybridization