Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1808 ATGAACTCCAGCACTTCGAATTCTCAATCAATGGCGACTTCGACGCCCACTGATGGGTCTAGCAAGAAGGTGAGAAAGCCCTACACTATAACCAAGTCGAGGGAAAGCTGGACCGAGGAAGAGCACGACAAGTTTCTAGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGACTTTGTTGGTTCAAAAACGGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTAAAAGTTCAGAAGAATGGGACAATTGCACACGTGCCTCCTCCACGACCTAAGCGCAAAGCTGCTCATCCATACCCACAAAAGGCACCAAAGAATGTTTTGGTTCCGTTACCAGCATCCATGGCTTACGTTTCTTCAACAAATACTATTACACCTGGGTATGCCACATGGGATGAAACTTCAATACCGATTAATGCTGGATCAAACAGATACATACCATGTCAGGATGAAATCACCACCCTTCATGGGAATGAAGCTGATATTGGATCAAAGGGGATATCAAGGATTAGCAACAGCAGTCTTAGCGGTGTTGGGACCTCTACTAGAATGCTACAGGGTTCTGAGATGCCAAAGCAGGGGAAAAAAGGTCCAGTGCTTCCTGGTTTACCAGACTTTGCTGAGGTTTACAGCTTTATTGGAAGTGTATTTGATCCAGATACAAAAGGTCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTGATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTGGAGCCTTTTAAGAACGTTTTGTCATCGTACGTTGGCAAGACGAGGATAGCAGAAGTTACCGCAGGAATTGCTGCCAAAAAGGAAATAACAAACGATCTATCATGTCAACCTGCTTAA 897 0.4326 MNSSTSNSQSMATSTPTDGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKAPKNVLVPLPASMAYVSSTNTITPGYATWDETSIPINAGSNRYIPCQDEITTLHGNEADIGSKGISRISNSSLSGVGTSTRMLQGSEMPKQGKKGPVLPGLPDFAEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDLEPFKNVLSSYVGKTRIAEVTAGIAAKKEITNDLSCQPA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1808 298 CDD SANT 36 79 IPR001005 -
Lele13g1808 298 SMART sant 33 81 IPR001005 -
Lele13g1808 298 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Lele13g1808 298 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
Lele13g1808 298 PANTHER SWI/SNF COMPLEX-RELATED 8 256 - -
Lele13g1808 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Lele13g1808 298 Gene3D - 37 84 - -
Lele13g1808 298 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Lele13g1808 298 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Lele13g1808 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Lele13g1808 298 MobiDBLite consensus disorder prediction 1 36 - -
Lele13g1808 298 MobiDBLite consensus disorder prediction 1 26 - -
Lele13g1808 298 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1808 Lele-ChrLele13 26201918 26206114 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele13g1808 Myb_DNA-binding 4.3e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1808 13 26201918 26206114 Lele15g0600 15 3530287 3534729 hybridization
Lele13g1808 13 26201918 26206114 Lele16g0614 16 3450284 3454521 hybridization