Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1805 ATGGCTGAAGCTCCGGGCAGTCCAGGCGGTGGCAGCCATGAGAGCGGTGAGCATAGCCCTCGCTCTAATGTCCGCGAGCAGGACAGGTTCCTTCCCATAGCCAACATCAGCCGAATTATGAAAAAGGCGCTTCCTGCTAATGGAAAAATAGCCAAGGACGCCAAGGAGACTGTTCAGGAATGTGTTTCAGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGACAAGTGTCAGAGAGAGAAGAGGAAGACTATTAATGGTGACGATTTGCTTTGGGCGATGGCAACTCTAGGTTTTGAGGATTATATTGATCCCCTGAAAATTTACCTAGCCAGATACAGAGAGGGTGATACCAAGAGTTCTGCAAAGGTTGGAGATTCATCGGCCAAGAAAGATGTTCAACCTAGTCCTAGTGCTCAGGTGGAATATATGTTTATGCACTATGCTTGGGTTGGTGGACATTTATCTTAG 471 0.4777 MAEAPGSPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYREGDTKSSAKVGDSSAKKDVQPSPSAQVEYMFMHYAWVGGHLS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1805 156 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Lele13g1805 156 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Lele13g1805 156 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Lele13g1805 156 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele13g1805 156 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Lele13g1805 156 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982
Lele13g1805 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Lele13g1805 156 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele13g1805 156 MobiDBLite consensus disorder prediction 1 27 - -
Lele13g1805 156 Gene3D Histone, subunit A 16 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1805 Lele-ChrLele13 26192728 26193622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1805 1 144 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.000 6.60e-76 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele13g1805 CBFD_NFYB_HMF 6.2e-28 CL0012