Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1804 ATGAATGCCGCCCTGGTTCCACCTTCATTGTCATCCATCTTCTCTTGTTCTTCTTCTGTCTCTAACCCATACCCTCTTCACTGCGTCTCTCCTCCTTTCAATCTCGCCGCCTCCAGGCCCTCTCACTCCTTTCTCGTTGGCGCTACTGCCAACTACTCCGATCCATCAGACCTGTCTCTGGTTTCCGCCACCTCTGATCCGACTGTCGAAGCCCTAGATCAGAAACTGCTAACACTCCTCCGCCAAAGGAAAACAGAAGAGGCGTGGATTGCCTATACCAACAGCGCCCACCTTCCTAGCCCCACTTGCCTCAGCCGCCTTGTTTCTCAATTATCCTTCCAAAATACCCGCTCGGGTCTCACGCGCGCCCAGTCCATTGTCACGCGTCTCCGTCATGAGCGACAGCTCCACCGCTTGGATGCCAATTGCCTTGGCCTACTGGCCGTGGCCGCTAGTAAGGCCGGCTACACGTCCTACGCCACGTCAATCGTCAAGTCCATGCTTCGCTCTGGCTATCTTCCCCACGTGAAGGCCTGGAGTGCCGTCGTCAGTGGCCTTGCTTCTTCCGGCGACGACGGTCCCGTGGAAGCTCTCAGGTTGTTCAAGGCGGTCATTCGGCGTGTACGAAAGTTCAATGATCTTCAAATAGTTTCAAACTCGCGGCCTGATACGGTTGCATTTAACGCGGCGTTAAATGCTTGTGCGAACTTGGGTGATAGTGAGAAGTTCTTGCAAGTGTTTGATGAAATGCCCCAATACGGTGTTGAACCCGATGCCTTGACTTACAATGTCATGATAAAGCTATGTTGTAAAACTGAGAGAAAATACCCGCTTGTGTTTGTGTTGGAGAGAATCATAGAAGTGGGAATTCCTATATGCATGACTACTTTGCATTCCCTAGTCGCAGCTTATGTTGGTTTTGGTGACATGAAGACAGCAGAGAAGTTGGTTCAAGCAATGAGGGAACAAAGAACGGATCTTTGCAAGATGCTAAGGGAGTCCAATTCAGAAGATTTGGTTGAAAATGATGAATCCGTTTTCAAAAAGTTGCTTCCAAATTTGACAAACCAGAGTGACAATGAACCACCATTGCTGACAAAAGTATATGCCCCCAACTCCAGAATTTATACCACCCTGATGAAGGGCTACATGCAGGCAGGTCGTGTGAGTGATACAGTGAGAATGCTTGAGGCAATGCGCCGTCAGGATGATCGTTCCAGCCATCCCGATCATGTATCGTACACCACTGTGGTTTCAGCACTTGTGAAGGCAGGTTCAATGAAGAGGGCTCGTCAAATCCTTGCTGAAATGACGAGAATTGGCGTGCCTCCAAATCTGATTACCTACAATATCCTGCTTAAGGGTTATTGCATGCAGCTGCAGATAGATCAGGCAAGGGAGCTACTTAAAGAGATGGTTGATGATGCAGGGATACAGCCTGATGTGGTTTCCTACAACATTCTGATTGATGGATGTATATTAGTTGACGACAGTGCTGGGGCTCTTGCCTTCTTCAATGAGATGAGAGCAAAAGGAATAGCTCCCACTAAGGTTAGTTATACAACTTTGATGAAAGCTTTTGCTTTGTCAGGTCAACCAAAGATGGCTCACAGGGTTTTTGATGAGATGCTCAATGATCCTCGGGTTAAGGCGGATAGAATAGCGTGGAATATGTTGGTGGAAGGGTATTGCAGGTTAGGGTTGATTGAAGAAGCAAAGAAAATAATCGAAAAGATGAAGGATAATGGATTGCATCCTGATGTGGCCACTTATGGTAGTCTTGCCAATGGAATAGCGTTAGCGAGAAGACCAGGAGAGGCACTTCTACTTTGGAATGAAGTGAAGGAGAGGTGTAGGGTTGAGAAGGAAGAAGGCAAATCTGATTCATCTATTGCGCCACCACTCAAACCAGATGAAGGACTTTTAGATACTTTGGCTGATATCTGTGTGAGGGCTGCATTCTTTAGGAAGGCCTTGGAAATCGTGGCTTGCATGGAAGAATATGGGATACCTCCCAACAAGACCAAGTTTACTAGAATCTATGTGGAAATGCATTCAAGAATGTTCACAAGCATGCATGCTTCAAAGGCAAGACAGAACAGAAGGATTGAGAGGAAAAGAGCAGCTGAGGCTTTCAAGTTTTGGTTGGGATTGCCTAATTCTTATTATGGAAGTGAGTGGCGTTTGGAACCTATTGATGGATATGCTTCTGATTCGGTTTAG 2223 0.471 MNAALVPPSLSSIFSCSSSVSNPYPLHCVSPPFNLAASRPSHSFLVGATANYSDPSDLSLVSATSDPTVEALDQKLLTLLRQRKTEEAWIAYTNSAHLPSPTCLSRLVSQLSFQNTRSGLTRAQSIVTRLRHERQLHRLDANCLGLLAVAASKAGYTSYATSIVKSMLRSGYLPHVKAWSAVVSGLASSGDDGPVEALRLFKAVIRRVRKFNDLQIVSNSRPDTVAFNAALNACANLGDSEKFLQVFDEMPQYGVEPDALTYNVMIKLCCKTERKYPLVFVLERIIEVGIPICMTTLHSLVAAYVGFGDMKTAEKLVQAMREQRTDLCKMLRESNSEDLVENDESVFKKLLPNLTNQSDNEPPLLTKVYAPNSRIYTTLMKGYMQAGRVSDTVRMLEAMRRQDDRSSHPDHVSYTTVVSALVKAGSMKRARQILAEMTRIGVPPNLITYNILLKGYCMQLQIDQARELLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALAFFNEMRAKGIAPTKVSYTTLMKAFALSGQPKMAHRVFDEMLNDPRVKADRIAWNMLVEGYCRLGLIEEAKKIIEKMKDNGLHPDVATYGSLANGIALARRPGEALLLWNEVKERCRVEKEEGKSDSSIAPPLKPDEGLLDTLADICVRAAFFRKALEIVACMEEYGIPPNKTKFTRIYVEMHSRMFTSMHASKARQNRRIERKRAAEAFKFWLGLPNSYYGSEWRLEPIDGYASDSV 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1804 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Lele13g1804 740 Pfam PPR repeat 412 442 IPR002885 -
Lele13g1804 740 Pfam PPR repeat 375 401 IPR002885 -
Lele13g1804 740 Pfam PPR repeat 518 545 IPR002885 -
Lele13g1804 740 Gene3D Tetratricopeptide repeat domain 402 497 IPR011990 GO:0005515
Lele13g1804 740 Gene3D Tetratricopeptide repeat domain 69 350 IPR011990 GO:0005515
Lele13g1804 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Lele13g1804 740 Gene3D Tetratricopeptide repeat domain 500 722 IPR011990 GO:0005515
Lele13g1804 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Lele13g1804 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 546 IPR002885 -
Lele13g1804 740 TIGRFAM PPR: pentatricopeptide repeat domain 447 482 IPR002885 -
Lele13g1804 740 TIGRFAM PPR: pentatricopeptide repeat domain 518 545 IPR002885 -
Lele13g1804 740 TIGRFAM PPR: pentatricopeptide repeat domain 483 516 IPR002885 -
Lele13g1804 740 TIGRFAM PPR: pentatricopeptide repeat domain 375 402 IPR002885 -
Lele13g1804 740 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Lele13g1804 740 TIGRFAM PPR: pentatricopeptide repeat domain 225 259 IPR002885 -
Lele13g1804 740 TIGRFAM PPR: pentatricopeptide repeat domain 412 445 IPR002885 -
Lele13g1804 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 480 IPR002885 -
Lele13g1804 740 Pfam PPR repeat family 445 492 IPR002885 -
Lele13g1804 740 Pfam PPR repeat family 222 271 IPR002885 -
Lele13g1804 740 Pfam PPR repeat family 552 597 IPR002885 -
Lele13g1804 740 PANTHER BNAC05G43320D PROTEIN 11 719 - -
Lele13g1804 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Lele13g1804 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1804 Lele-ChrLele13 26187461 26189683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1804 367 680 Glycosyltransferase AT1G05670 23.647 1.28e-16 82.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1804 13 26187461 26189683 Lele15g0604 15 3545645 3551413 hybridization
Lele13g1804 13 26187461 26189683 Lele16g0617 16 3466331 3468556 hybridization