Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele13g1803 | ATGTACGGAACTCCTTTAGAGAAGCACATAGTTGGATATGGCTCCTGGGATCCAAGTGGATTCATGGATGTGGCGGGCGTTTATTTTCCTCAGCAGCTTTTCACAGTCGAACAAAGCTGGCTCGACCTCATGTCTGCTCTCGTCTCTTTCTTTTCTTCACCGTCGGGCCAAAACCTAACTTCCCAGGTACAAAATCATCATGGCAACTTTGCCTTGTCACTTGACTTCCAGCAATTTCAAAAAATATGTCATATTGAGGAATTTTATAAAATGTTAGAGGAGAAACCTAAAATCGCTCTCTTGTGCATGAGCGCTGCAGTTCATAAGGTTCTTATTGCCATATGGGAGAGTGACCAACTTGAGGATGGTGCAAAAGTAGACATCCGACTGCATAACTGTCCTGAAGCTATGATTGCTCTGAAAAACTTAAAAGCAGCATATATTGATAAACTTGTCTCAGTGCGTGGTACTGTTGTGAAGGCCAGCACTGTCAGGCCCCTTGTGGTAGAAATGAGTTTTGAATGCGGAAAGTGCAAACAAAGAATTAGGCGTATATTTCCTGATGGAAAATTTTCACCACCATCAATTTGCAATTTGAATGGCTGCAAGAGCAAAATGTTTAATCCATTACGATCTACAGCTCAAGCTATAGATTTTCAAAAAATAAGGTTGCAAGAACTCCTAAAACCCGAAGACCATGAAGAAGGACGAGTTCCCCGGACAGTGGAATGTGAGCTTACCCAAGATCTCGTTGATACATGCATACCTGGAGATGTGTTGACTGTTACTGGAATTATAAGAGGAATTAACACGTACATGGATATTGGAGGAGGTAAGTCAAAGAACAGAAGCCAGGGATTTTACTATTTGTATCTCGAAGCTGTTTCCATACAAAATTCCAAGTCACAGCCTACAAATGAGGATTTGCAAGAAACTAATCCCAAAGCAAGACCAGCTGAGCTGCTTGATTTGTTTTCATTTTCTTCCAGGGATTTAGAGTTTATTGTGAAATTTTCAATGGAGCATGGCTCAGATTTGTTTCGGCAAATACTTCAATCTATATGCCCATCTATCTATGGGCATGAGCTAGTTAAAGCTGGGATTACGCTTGCATTATTTGGGGGTGTACGAAAACATTCTATGGATCAGAATAAGGTTCCTGTAAGGGGAGACATTCATGTCATAATCGTCGGTGATCCTGGCCTAGGCAAGAGCCAATTGCTACAAGCGGCAGCCGCTGTTTCTCCACGAGGCATCTATGTCTGCGGTAATGCCACAACTAAAGCCGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACGAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGAGTGTGCTGTATTGATGAGTTTGATAAAATGTCAGCCGAACATCAGGCACTACTGGAGGCCATGGAACAACAGTGTGTCTCTATTGCAAAGGCAGGATTGGTAGCAAGTTTATCAGCTCGAACTTCTGTCTTGGCGGCGGCAAATCCCGCTGGTGGTCATTATAACCGTGCCAAAACTGTGAATGAAAACTTGAAAATGAGTGCCGCTCTGCTGTCCCGATTTGATTTAGTTTTCATACTGCTGGACAAACCTGATGAACTTCTGGACAAACGAGTCTCGGAGCACATCATGTCACTTCATGCTGGGAATGGACAACTAGCAGTCAAAAAGCAACGTAGAGATTTATCTTCTGATTCAAGAATTACGGTACCACAGAATGCTGAAAGCATAGATTTGGGGGTTAGATCTGGTTCTTTGATTTCAAAGTTGAGACTTAACCCGCAAAGAGATAGTGATTTTGTTCCATTGCCTTCTCAACTTCTTCGAAAATACATTGCTTATGCGAGGAGTTTTGTCTTTCCTAGGATGTCCAAGCCCGCAGCAGAAATCCTACAAAAGTTTTATCTTAAGCTGAGAGATCATAATACCTCAGCTGATGGTACACCGATAACAGCAAGGCAACTTGAAAGTCTAGTGAGGCTTGCTGAAGCTCGAGCTCGGCTAGACTTGAGAGAAGAAATAACGGCCCAGGATGCCATGGATGTAGTTGAAATAATGAAGGAGTCCCTGTATGATAAATACGTAGATGAGCATGGATTTGTGGATTTTGGACGAAGTGGGGGGATGAGTCAACAGAAAGAGGCGAAACGCTTCCTAAGTGCCCTCAATAAACAATCAGAATTACTGCAGAAAGATTGCTTTTCAATATCTGAAATATATAGTCTGGCGGATAGAATTGGCCTACAAGTCCCTGATGTGGACACTTTCATCGAAAATTTAAACAGCGTGGGTTATCTACTCAAAAAGGGACCAAAGACATACCAGGTGTTATCCTCCTCGCATACACGAAGCCAATCATCTAGGGTGAAAGGCTAA | 2406 | 0.4293 | MYGTPLEKHIVGYGSWDPSGFMDVAGVYFPQQLFTVEQSWLDLMSALVSFFSSPSGQNLTSQVQNHHGNFALSLDFQQFQKICHIEEFYKMLEEKPKIALLCMSAAVHKVLIAIWESDQLEDGAKVDIRLHNCPEAMIALKNLKAAYIDKLVSVRGTVVKASTVRPLVVEMSFECGKCKQRIRRIFPDGKFSPPSICNLNGCKSKMFNPLRSTAQAIDFQKIRLQELLKPEDHEEGRVPRTVECELTQDLVDTCIPGDVLTVTGIIRGINTYMDIGGGKSKNRSQGFYYLYLEAVSIQNSKSQPTNEDLQETNPKARPAELLDLFSFSSRDLEFIVKFSMEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGVCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHAGNGQLAVKKQRRDLSSDSRITVPQNAESIDLGVRSGSLISKLRLNPQRDSDFVPLPSQLLRKYIAYARSFVFPRMSKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLREEITAQDAMDVVEIMKESLYDKYVDEHGFVDFGRSGGMSQQKEAKRFLSALNKQSELLQKDCFSISEIYSLADRIGLQVPDVDTFIENLNSVGYLLKKGPKTYQVLSSSHTRSQSSRVKG | 801 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele13g1803 | 801 | Gene3D | - | 167 | 217 | - | - | |
| Lele13g1803 | 801 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 71 | 737 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | ProSitePatterns | MCM family signature. | 457 | 465 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lele13g1803 | 801 | Gene3D | - | 324 | 709 | IPR027417 | - | |
| Lele13g1803 | 801 | FunFam | DNA helicase MCM8 isoform X1 | 167 | 218 | - | - | |
| Lele13g1803 | 801 | SMART | mcm | 136 | 701 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | Pfam | MCM AAA-lid domain | 617 | 700 | IPR041562 | - | |
| Lele13g1803 | 801 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 706 | IPR027417 | - | |
| Lele13g1803 | 801 | ProSiteProfiles | MCM family domain profile. | 346 | 553 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 476 | 489 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 389 | 404 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 527 | 535 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 449 | 463 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 500 | 512 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | Coils | Coil | 461 | 481 | - | - | |
| Lele13g1803 | 801 | CDD | MCM8 | 350 | 699 | - | - | |
| Lele13g1803 | 801 | Pfam | MCM OB domain | 140 | 268 | IPR033762 | - | |
| Lele13g1803 | 801 | Gene3D | - | 140 | 269 | IPR012340 | - | |
| Lele13g1803 | 801 | SMART | AAA_5 | 390 | 542 | IPR003593 | - | |
| Lele13g1803 | 801 | Pfam | MCM P-loop domain | 340 | 557 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele13g1803 | 801 | SUPERFAMILY | Nucleic acid-binding proteins | 64 | 270 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele13g1803 | Lele-ChrLele13 | 26181479 | 26186846 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele13g1803 | 17 | 787 | Core DNA Replication Machinery Family | AT3G09660 | 71.355 | 0.0 | 1145 |