Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1800 ATGGACCTCAGAAATCAGAACATCAGATTTGGCAAATTATGTCTTCTCACAGTTCAGTCCTATTACAGGAAGACTCGTGGTATGGGAGCTGCCCGCAAGTTGAGATCCCACCGCAGGAGGCAAAGGTGGGCAGACAAGGCATACAAAAAGTCTCACCTTGGGAATGAGTGGAAGAAGCCTTTTGCTGGCTCATCCCATGCAAAGGGTATTGTGCTTGAAAAGATAGGGATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTCATTAAAAATGGAAAGAAGATCGCCGCATTTGTTCCCAACGATGGTTGCTTAAACTATATAGAAGAGAATGATGAAGTATTGATAGCTGGATTTGGGCGAAAAGGTCACGCTGTCGGTGATATTCCTGGGGTCAGGTTCAAGGTTGTGAAGGTGTCTGGTGTTTCCCTCCTGGCACTCTTCAAGGAGAAGAAGGAGAAGCCCAGGTCTTAA 492 0.4695 MDLRNQNIRFGKLCLLTVQSYYRKTRGMGAARKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1800 163 CDD Ribosomal_S23 47 160 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele13g1800 163 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 23 163 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele13g1800 163 FunFam 40S ribosomal protein S23 46 163 - -
Lele13g1800 163 ProSitePatterns Ribosomal protein S12 signature. 80 87 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele13g1800 163 SUPERFAMILY Nucleic acid-binding proteins 41 161 IPR012340 -
Lele13g1800 163 Gene3D - 46 163 IPR012340 -
Lele13g1800 163 TIGRFAM uS12_E_A: ribosomal protein uS12 27 162 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele13g1800 163 Pfam Ribosomal protein S12/S23 52 162 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1800 Lele-ChrLele13 26175275 26176856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1800 24 163 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.000 6.22e-94 267