Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1797 ATGAAAGCTGTCGCGGACTTCTGGAGAAGTGGAACGCATAGTGCGGTGAGCAAGCCTTGGTGTCTTCAAATCATGAACAACGGCTCCTCTTTTCTGTTTTCCGGCATTCGCTTCGATAGAAAAAGGTTCGGCAGCGATATTGCCAAGTTCGAGAAAAAAGAAAAAGATCATTCCGTGGAGGTTTCGAGCTCGTTTGAAATTGAGAAAGCAGAACCAGTTGATGGAAAAGCTCCTGCGAAGAAGAGGAAGCGGAAGGGAGTGGTTTCAGAAACAGTTGAGGGATTCAATGTCTTTAAGAAGTCCAAATCAGCGGTACTTCAACCTAAAGATGAAGATAAAGCTGTGGTTGAGTCCGTTCAGCAGACAAAAGAACAAAATAGGCAACTTGAGCGGGATGCTCTATTCAGGAAGAGGCACAGCATTCATGTGTCTGGGTACAACGTCCCTTCCCCACTTCAAAATTTTGAGGAGTTGAGGTCAAGATATAAATGTGAACCATATATGTTACGCAATCTGGCAGAACTCGGATTCAGAGAACCAACACCAATCCAAAGACAAGCTATACCTGTTCTTTTACATGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGGAAAACCTTGGCATTTGTGTGTCCTATGCTTATAAAGCTTAAGGATCCTTCGAAAAATGGCATTCGAGCTGTTATCCTTTGTCCCACTCGTGAATTATCTTCCCAAACTTACAGAGAGTGCAAAAGGCTGGCTAAAGGCAAAAAGTTCCGTATTAAGTTAATGACTAAAGAGCTAGCAAGAAATGGTGATTTTGCTAAATTCTCATGTGATATACTCATATCCACACCACTTCGATTACACTCAACCATCCGGAGGAAAAAGGTTGACCTCAGCAGAGTTGAGTATCTTGTTCTGGATGAATCTGATAAGCTTTTTGAGCTTGGATTATTCGAGCAGATCGATTCTGTTATTCAAGCATGTTCAAACCCTTCAATAATACGCTCACTTTTCAGTGCCACTCTACCTGATTCTGTTGAGGATCGTGCTCGTGAGCTTATGCATGATGCCATTAGAGTTATTGTTGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTAGTTTTTTCTGGAAGTGAAGAGGGGAAACTTATGGCAATTCGCCAAAGCTTTGCAGAGAGTTTAAATCCCCCAATATTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAAGAGCTCTATGGTGAACTTCAATTCGATAACCTCAGAGTTGGGGTTATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAGATGCTGTTGATAATTTCAGAGCGGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCTCGAGGCATGGATTTCAAAGCTGTGAAATGTGTGATTAATTATGATTTTCCAGATTCTGCCGCTGCTTACATCCATAGGATTGGTCGTTCTGGGAGAGCAGGGAGGGCTGGAGAAGCTATAACATTTTATTCGGAGGAAGACATGCCCTTGCTGCGTAATATAGCCAATCTGATGGCAACATCAGGTTGTGAAGTTCCATCTTTTCTCCTGGAGCTTCCCAAAAAGAAGTGGAAGAAACACCGCCCCAAAAGAGATTCTATCTCTACCAAACCCAACGTATAA 1653 0.4265 MKAVADFWRSGTHSAVSKPWCLQIMNNGSSFLFSGIRFDRKRFGSDIAKFEKKEKDHSVEVSSSFEIEKAEPVDGKAPAKKRKRKGVVSETVEGFNVFKKSKSAVLQPKDEDKAVVESVQQTKEQNRQLERDALFRKRHSIHVSGYNVPSPLQNFEELRSRYKCEPYMLRNLAELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFVCPMLIKLKDPSKNGIRAVILCPTRELSSQTYRECKRLAKGKKFRIKLMTKELARNGDFAKFSCDILISTPLRLHSTIRRKKVDLSRVEYLVLDESDKLFELGLFEQIDSVIQACSNPSIIRSLFSATLPDSVEDRARELMHDAIRVIVGRKNMASETIKQKLVFSGSEEGKLMAIRQSFAESLNPPILVFVQSKERAKELYGELQFDNLRVGVIHSDLSQKEREDAVDNFRAGKTWVLIATDVVARGMDFKAVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEEDMPLLRNIANLMATSGCEVPSFLLELPKKKWKKHRPKRDSISTKPNV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1797 550 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Lele13g1797 550 SMART helicmild6 410 491 IPR001650 -
Lele13g1797 550 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 530 IPR001650 -
Lele13g1797 550 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 358 IPR014001 -
Lele13g1797 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 503 IPR027417 -
Lele13g1797 550 Gene3D - 132 365 IPR027417 -
Lele13g1797 550 Pfam DEAD/DEAH box helicase 181 345 IPR011545 GO:0003676|GO:0005524
Lele13g1797 550 CDD SF2_C_DEAD 370 500 - -
Lele13g1797 550 Gene3D - 366 545 IPR027417 -
Lele13g1797 550 CDD DEADc_DDX52 169 361 IPR044764 GO:0003724|GO:0005524|GO:0030490
Lele13g1797 550 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 116 518 - -
Lele13g1797 550 Pfam Helicase conserved C-terminal domain 393 491 IPR001650 -
Lele13g1797 550 SMART ultradead3 176 373 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1797 Lele-ChrLele13 26155276 26161148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1797 168 529 Eukaryotic Initiation Factors Gene Family AT3G19760 32.692 1.53e-58 198