Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1786 ATGGTTGTTACCTTTTTACTATCTGCCCTATGGCATGTAAGAGCTTATTGTCACATCCTTTATAGCGCTCTTGGTCTTGAATCCAACATCTATGATAACTACTGTCAAGATTGTCAGTTATTTGAGGGCCTGTCTTTGACTACGGTGTCTATCCTGATATTGCAAGTGACAGCTATGAGTCATAGGCATTTGTATAGCACATCTCAAATGTTTGAGAGTGATCATGACCAAAGTTGGAATTCTATGCATACTGATCAACAGTATGTGCACCTTGGTAGAGCTAGCACTGCAGAGAATGGTTCTTTCGTTTATCCTGTGGAAAATATGCCTATAGAAGGCATTTCTTTTGCCTCTAATTGGAATTCTACCACAATGCCAAATGGATTTGCATCCTCAAGTCTCAATATTGAAGTACCACCTCATCAATCTGATGCATCAGGCTCTTCTCATGATCATTTTCTGCATTCATCAAGTGCTGCGCCCTTCTTTGCAGTTTCCGAAAATTATGCCCATCAGCCTTCTTCTTCTTCCAATTATGAGAGACAGCCATTTCACGTCGTTGATGGTGGTTTTATTGATCTTACGATGGGAAATGGAAGAGGGCCTCACAAGAGGAAGAGCCCCGGAATTCCTCCAGTCTGTGAGGGAGGTAGTACAAGCAGATACATAAATGCTGAAAGTTCAACTGATCTTCCAATGTCTTCAGAAATACGGCAGGAGAAGCCAAATATGGATTCTCAATATTTGCATCGGGATCAAGTTACCATGCCACTCGCCTTCAGAGGTAGTGGTCTTTCAATCAGGGGTGACGGTTCCTTGAGAAATGTGAGAAGCCGTTCTGCGCTTGATTTTGAATCCAACCTGGCTAGGACCCATTTATCTGCCAATCATTCACACAACTACTCCACTGGTCTACCCATTGACCATTCTAGCACAGTGGATCTCTCAGGTCAGAGCTCTGGCACATTAACAAGGGATTGGAGCCATATGAGCACGTCTCATGCTCATGGCAGGGTGCTATTACCAGATGCAAGTGCTCTTAATTGTGAGCCAAATCCCTTCCTTGTTGGAAGTGGTGCTAGTAATGCCTCTGTGGATGTTGGGGATTACCATCATGAATTCAGTACAAGCAGAAATCCTATTGTACCTCAGAGTTTTCATAATAATCTGACTCAGGCTGCTAGGGGAGTGCGAAGCAACTTTTCACAAAGGTCTACTCCACCTTTTAGATCTTCTTCAAGCTTGCGCTTGGGACATGTAGCACCATTAGATAATGGATTGCAAATGGTCGCCGATAATTACTCATCAAGACATCCAAGGCCATTGACAAGCATTGGCTGGCGGAACAGTAACAGAAACGGAAGGTCAAGGATATGTAGTGATAGATATCGACCATTGGCTGATGCACCTAGCCTCCAAGATCGATTTTCTTCAGAGGGTTTCATGATTGTTGATCGTGGGTTGCCATATGGATCTAGAAGTATGGTTGATCAGTATACGGACATGAGGATGGACATAGACAACATGAGCTATGAGGAACTACTTGCCCTTGGAGAGAGGATTGGTCATGTCAACACAGGATTGACTGAGGATTTGATTTCAAAATGCATGACAGAAACAATATATTGTTCATCTGAGCAAAGTCAGGAGGAAGGAACTTGTGTAATCTGTTTGGAAGAATACAAGAACATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCAATGAAGAACAAATGTCCAATCTGCAAAGCTTCTGCTCTGGCAGATGATAGGCAGGATAAATAA 1824 0.4309 MVVTFLLSALWHVRAYCHILYSALGLESNIYDNYCQDCQLFEGLSLTTVSILILQVTAMSHRHLYSTSQMFESDHDQSWNSMHTDQQYVHLGRASTAENGSFVYPVENMPIEGISFASNWNSTTMPNGFASSSLNIEVPPHQSDASGSSHDHFLHSSSAAPFFAVSENYAHQPSSSSNYERQPFHVVDGGFIDLTMGNGRGPHKRKSPGIPPVCEGGSTSRYINAESSTDLPMSSEIRQEKPNMDSQYLHRDQVTMPLAFRGSGLSIRGDGSLRNVRSRSALDFESNLARTHLSANHSHNYSTGLPIDHSSTVDLSGQSSGTLTRDWSHMSTSHAHGRVLLPDASALNCEPNPFLVGSGASNASVDVGDYHHEFSTSRNPIVPQSFHNNLTQAARGVRSNFSQRSTPPFRSSSSLRLGHVAPLDNGLQMVADNYSSRHPRPLTSIGWRNSNRNGRSRICSDRYRPLADAPSLQDRFSSEGFMIVDRGLPYGSRSMVDQYTDMRMDIDNMSYEELLALGERIGHVNTGLTEDLISKCMTETIYCSSEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKASALADDRQDK 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1786 607 SUPERFAMILY RING/U-box 543 599 - -
Lele13g1786 607 ProSiteProfiles Zinc finger RING-type profile. 554 596 IPR001841 -
Lele13g1786 607 Pfam Ring finger domain 553 596 IPR001841 -
Lele13g1786 607 SMART ring_2 554 595 IPR001841 -
Lele13g1786 607 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 172 600 IPR045191 GO:0061630
Lele13g1786 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 519 600 IPR013083 -
Lele13g1786 607 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 519 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1786 Lele-ChrLele13 26113089 26117103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1786 59 602 C3H Transcription Factor Family AT2G37150 39.711 1.01e-103 323