Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1782 ATGGCAACGCCCTGCGTCATTGTAATGCCCAGATTCCCTCCCACTTTTGGGATTATGGACGGTGCAGGGGGGCCCACGCCCTCATTTCCCTGGGCCCCACCCCATGACACCGAGACAGACACTGGTAAAAGGCTCTTTGACCCTTTCTCCTTATCCGCTTCCATCGGAGGCTATGCTCCACAACAAAACCCAAACCCTAACCCTAAACCTAATCCCAAGAAGAAAAGGAATCTCCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCGCTTTCACCGAAAACTCTCATGGCAACCAACAGGTTCATTTGCGAAATATGCAACAAAGGGTTTCAGAGAGATCAGAACCTTCAGCTTCACCGGAGGGGTCACAATCTTCCATGGAAGTTACGACAAAGGTCCAACAAAGAAGTTCGAAAGAAGGTTTACATCTGCCCGGAAAAGACCTGCGTCCACCATGACCCATCCCGAGCACTGGGCGACCTCACTGGCATAAAGAAGCATTTTAGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATACGCAGTCCAATCCGACTGGAAAGCTCACACCAAGACCTGTGGAACAAGAGAATACAAGTGCGATTGTGGGAACCTATTCTCCAGAAAGGACAGCTTCATCACACACAGAGCTTTCTGCGATGCCTTAGCGGAAGAAAGTGCCCGACTCACCTCGGTTGCTACAGCAACAAATCTGAATTTCAAGAACGAAGGGAACACGATGAGCTCACAACCTAATCTGGGACTTGAAAACAACACAGAGATAATTTCTCAATTCGGCTCGCATGGACTTCGTGCAGATTTTAATGGAATGGGAATGGTTGCGGACCAGCAAAGAGCGAGCTTATCTATGTGGTTGAACCAGGTAAATAACAATGGTCTTGATGTTGGAGGGCTATTTGGATCTTCAAGTTGTTCTTCAGGTTTGGGTGAGCATATGGCACAAATGACGAGCCAAGCTAATCATAGTGCTTTTGGTGGGTCTTGTAATTTTGGAATGCCTGCTTCGAATTCAACAAACGCGGGAGTTTTACTATCAAGTGGGAAAAGGGGTGAAGCAATGTCAAAGCCAGCTTCTCCCATGTCAGCCACTGCTTTGCTGCAGAAAGCAGCTCAGATGGGTTCCACTAGAAGTAGCAACGACAACAACAATCCCTCTATTTTCAGTAGCACTTTGGGAGTGATGTCCTCGTCTTCTAATTCCCACGCGACCACTAATCTCAATGACGACAACAACAATAACAACGCCAATAATAATCCACATAATTTCAGTTCAACTAGCAGTACTGCAGAACCAGTGCTAGCAGATAACAACTTCAGCTCGTTCACGCATGCATCGAACGGTACTAATCTTGGCCAGCTCTTGATGCAGACCAGGACAAAGCAAAGTGAACATCAAGTGCAATTGAAGCTTTACCCAGGTGGTTCATCAGAACATAATTTAACAAGAGATTTTCTCGGCATGGCCGGTGACGGTGGCGCCGGAGGAGCTGGGACCCCTCCTCCGTTTCTGCCGCAAGAGCTGGCAAAGTTCGCGTCCATAGGCTCACCCATGGGTTTAACCCAATTTACTGCCAACCACTGA 1623 0.4787 MATPCVIVMPRFPPTFGIMDGAGGPTPSFPWAPPHDTETDTGKRLFDPFSLSASIGGYAPQQNPNPNPKPNPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVATATNLNFKNEGNTMSSQPNLGLENNTEIISQFGSHGLRADFNGMGMVADQQRASLSMWLNQVNNNGLDVGGLFGSSSCSSGLGEHMAQMTSQANHSAFGGSCNFGMPASNSTNAGVLLSSGKRGEAMSKPASPMSATALLQKAAQMGSTRSSNDNNNPSIFSSTLGVMSSSSNSHATTNLNDDNNNNNANNNPHNFSSTSSTAEPVLADNNFSSFTHASNGTNLGQLLMQTRTKQSEHQVQLKLYPGGSSEHNLTRDFLGMAGDGGAGGAGTPPPFLPQELAKFASIGSPMGLTQFTANH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1782 540 FunFam protein indeterminate-domain 12-like 81 149 - -
Lele13g1782 540 MobiDBLite consensus disorder prediction 374 444 - -
Lele13g1782 540 SUPERFAMILY beta-beta-alpha zinc fingers 101 198 IPR036236 -
Lele13g1782 540 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 61 508 IPR031140 -
Lele13g1782 540 Gene3D Classic Zinc Finger 152 235 - -
Lele13g1782 540 Gene3D Classic Zinc Finger 80 151 - -
Lele13g1782 540 MobiDBLite consensus disorder prediction 21 86 - -
Lele13g1782 540 MobiDBLite consensus disorder prediction 355 444 - -
Lele13g1782 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 124 IPR013087 -
Lele13g1782 540 FunFam protein indeterminate-domain 5, chloroplastic-like 156 235 - -
Lele13g1782 540 SMART c2h2final6 143 173 IPR013087 -
Lele13g1782 540 SMART c2h2final6 102 124 IPR013087 -
Lele13g1782 540 SMART c2h2final6 178 198 IPR013087 -
Lele13g1782 540 Pfam Zinc-finger double-stranded RNA-binding 102 124 IPR022755 -
Lele13g1782 540 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1782 Lele-ChrLele13 26090557 26093646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1782 63 414 IDZ Gene Family AT3G50700 56.374 2.71e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g1782 zf-C2H2_jaz 8e-05 CL0361