LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g1776	ATGCGGTATGCCGAGTTTACTTCTCTTTTCCCGCGCCATGTTCTTTCTCTTTATCATCTTCAATCTCGGAGATACAGGCAAGGAAGAGAGAATGAGGGAACGTTTCGAGTGTTCACATACCGCGAATTGAAATCCGCGACCAGGAGTTTCGATTCCTCAAACAAGATTGGAGAAGGCGGTTTCGGCACTGTGTACAAGGGACGGCTTCCGGATGGCACATTCGTGGCGGTCAAAGTGCTTTTGATCGAACTGGATTCGCTGCGAGGAGAGAAGGAATTCGTAGCAGAACTGGCTACTCTGGGCAATATCCAGCACCAAAACCTAGTCTCTCTTCGAGGTTGTTGTGTGGAAGGAGCTCGCAGATACTTAGTCTACGAGTACATGGTAAACAACAGCCTTCACCACTACTTTTTAGGTTCACAGGAGGGCAGGATGAGATTCAACTGGGAATCAAGGAAGGAAGTATCCATAGGAGTGGCTCGAGGACTTGCTTATCTTCACGAGGAAATTAAGCCTTATATTGTGCACAGGGACATCAAAGCCAGAAATATACTTCTTGATCGACATTTGAGGCCAAAAGTTTCCGACTTTGGTCTGGCTAAGTTGTTGAGAGACGACAAGTCTTACGTTAGTACTCAAGTCGCAGGGACATTGGGTTATCTTGCTCCGGAATATGCCAGTTCTGGGAAGGTGACAAGAAAATCAGATGTCTATAGCTACGGAATATTACTCCTCGGAATTGTGAGCGGCCTACCGCCGGTTGATCCTTACCAAGATACGGAACGTTTCCTGGTTGAGAAGGCGTGGGCGGCGTACGAAGCTGGGGATTTAACGAAGATGGTGGATGCAGAGCTAAAACAGAGCTTCCCAGAGGAAGAGAGCATGAGATTCCTGAAGGTGGGGCTGCTTTGCGTGCAAGAAACAGCAAAGCTGAGGCCACGAATGACAGAAGTAGTTGAAATGTTGAGCAACAACACTGAAGTATTGGCAAATGTGAGTATTTCAAAACCAGGGCTTGTGCCTGATCTCAGGGCTATCAGAATCAGAGACGCACCCCATTCAAAGGCTTCAACCTCCAGTGCAGCAACCTATGCAACTTCCTCTCGGAGTTCGGCCAATCTTGGCCGTTAA	1131	0.4792	MRYAEFTSLFPRHVLSLYHLQSRRYRQGRENEGTFRVFTYRELKSATRSFDSSNKIGEGGFGTVYKGRLPDGTFVAVKVLLIELDSLRGEKEFVAELATLGNIQHQNLVSLRGCCVEGARRYLVYEYMVNNSLHHYFLGSQEGRMRFNWESRKEVSIGVARGLAYLHEEIKPYIVHRDIKARNILLDRHLRPKVSDFGLAKLLRDDKSYVSTQVAGTLGYLAPEYASSGKVTRKSDVYSYGILLLGIVSGLPPVDPYQDTERFLVEKAWAAYEAGDLTKMVDAELKQSFPEEESMRFLKVGLLCVQETAKLRPRMTEVVEMLSNNTEVLANVSISKPGLVPDLRAIRIRDAPHSKASTSSAATYATSSRSSANLGR	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g1776	376	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	174	186	IPR008271	GO:0004672\|GO:0006468
	Lele13g1776	376	Pfam	Protein tyrosine and serine/threonine kinase	53	322	IPR001245	GO:0004672\|GO:0006468
	Lele13g1776	376	MobiDBLite	consensus disorder prediction	357	376	-	-
	Lele13g1776	376	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	128	332	-	-
	Lele13g1776	376	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	35	365	-	-
	Lele13g1776	376	ProSiteProfiles	Protein kinase domain profile.	50	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele13g1776	376	Gene3D	Phosphorylase Kinase; domain 1	15	127	-	-
	Lele13g1776	376	Gene3D	Transferase(Phosphotransferase) domain 1	128	335	-	-
	Lele13g1776	376	CDD	STKc_IRAK	56	322	-	-
	Lele13g1776	376	SUPERFAMILY	Protein kinase-like (PK-like)	33	329	IPR011009	-
	Lele13g1776	376	FunFam	Serine/threonine-protein kinase receptor	21	127	-	-
	Lele13g1776	376	ProSitePatterns	Protein kinases ATP-binding region signature.	56	78	IPR017441	GO:0005524
	Lele13g1776	376	SMART	serkin_6	50	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g1776	Lele-ChrLele13	26063573	26065590	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g1776	37	342	Receptor kinase-like Gene Family	AT1G56120	50.489	4.52e-93	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele13g1776		PK_Tyr_Ser-Thr	1.4e-48	CL0016