LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g1775	ATGCAAGTCCTCTGTGCGCATAGCTTTCGAGGGGTTTCTTCTTCTGTCTTTCTTCAGCTTCTGCTATTCCTGTTCTCATCTTGCGCGTATGGATTAGGGGCGATGGGACCAATATCGGCCTCGTTTGGTAAATATGAATTCTTCTGCGCCATCGATGCAAGTGGGAAGCAGGATGCCATTTGCTGGGGGAAGAACATCACTTCATCGATTCCACCGTCTTCTTCAGCTTCAGCCTCTGTTACTGACAGCCCTCCTATGGCAGCTTTATCCGGTGGCGAAGGGTTTATGTGTGGCATTCAAGCAAGCACTTCGCAAGCATACTGCTGGAGCGCCACGAAACCAGCAACAGATCTTGTGCCTCCTGCGTACCAATCCTATGCTTATTCTCAAATAGCAGCAGGCAAGAATCATGTTTGTGCCATCAGGGGATCTTATTATTCTAATGAAGATTCCGGAATTGTTGATTGTTGGGAAATTATGAGAACTGCGGATAACAGCTTAAAGTGGAAGCATAGCGATTTGTATTACGATCACTCAACTAGCAATCTTGCATTAAACAAAATCGTAGCAGGTGAGGGATTCGCTTGTGGTGCGGTCAGAGACGGAGGGCTTGTCTGTTGGGGACCTACATCCGCGTACTTGGGGGTATCCAATGTGTCCGAGAACTTCTCAGTCTTGGTTTCGGGAAGGAGTTCAATTTGTGGACTTTTGAACGTTTCTGGAGATTTGAAATGTTGGGGTGATTCAGATTCATTTGCTGATCCACCTGCTGGGGTTGGATTAATCTCTCTGTCAGCCGGGGCTCGCCATTATTGTGGTATTCGAGCAGATAATCATATAATGGAATGTTGGGGGAGTTTCAATTCGTCTGTGGTTCCAAAAGGTTCTGGATTCATGGCAATCGCTTCTTCAGATTATACAACTTGTGGCGTTAGAGAAGAAGATCTTCTGATTGATTGCTGGTTGGTGAATGCGTCCACAGCCGAGTTTGATCCTCCATTGGAATTATCAAGTCCAGGTATCTGCAGTTCCAGTTCATGCAATCAAGGTGAGTTTGCTTTCAATGTTAGTATTCTGAATGAGCCAGGTTTAACAACCCTCTGCGTTCGAAAAGATTTGAGGATCTGTTCGCCCTGTGGATCAAACTGTTCAGAAGGCTTTTTCTTGTCCAGTCCATGCACTGAGAATTCCGACAGGGTATGCACTGCTTGTTCTCTTTGCCAAAACAGCTCCTGCTGGGATGTTTGTCGACTTGAGTCATCTCCAGATACTGTTCATAAGAAGAGCTGGCACCATTTGCGTCGATTATTGATCATAATTGGGTCAGCAACTTTAGGATTCTTGATTATGATGACTTGTGGGTGTATTCTCTCATGTTTGATCAGTAAGAAAGAATCCAAATCTGGCACGGCCAAACCAGAGAAGCAAGCTGATCTTAATGTTGATCTTCACTCTTTTCCTTCTACAACTTCCTGTCCTGGCATGCCTCAGATTTTCCGACTCTCAGAGCTAAAGGATGCCACTAATGGGTTCAAGGAATTCAACGAGCTTGGCAGAGGAAGTTATGGCTTTGTATACAAAGCTGTATTAGCAGATGGCAGGGTGGTTGCAGTGAAGAGGGCCAATGCTGCCACAATTATCCATACAAACAATCGTGACTTTGAAATGGAACTGGAAATCCTCTGCAAAATCCGTCACTGTAATATCGTCAACTTGTTGGGTTACTGTGCAGAGATGGGAGAGAGGCTTCTTGTTTACGAGTATATGCCACATGGCACACTTTATGATCACCTTCACGGTGGGCTTTCTCCTCTGAATTGGAACCTCAGGCTAAAGATATCAATGCAAACCGCAAAAGCTCTTGAGTATCTGCAAAAGGAACTAGCCCCACCAATTGTGCACAAGGATCTTAAAAGTTCAAACATTCTCTTGGATTCTGAATGGGGAGCGAGAATTTCAGACTTTGGACTCCTCACTTCAGGTGACAAAGATCAAAATGGGGATGTGCAGAGCGATGTTTACAACTTTGGGATTGTGTTGCTTGAGATTCTGAGTGGAAGAAAAGCTTATGACGGAGATTTCATGCCTCCCAACATAGTTGAGTGGGCAGTGCCACTGATCAAACTGGGGAAAGCTGCAGCCATAATTGATCGCTCTGTAACTCTTCCACGGATCGTTGAGCCATTGCTGAAGCTTGCTGATATTGCAGAGCTTGCTGTGAGACACAATCCCAGCGAGCGTCCGGCTATGTCAGAGATAGCATCTTGGTTGGAGCAGATTGTGAAGGACGGTTTGATCTTATAATGTTGTCGATCTGAAATTTTTTGGCCCGGAGATCATGCTGGGTTGTGTCTTGTATTAAAGTTGTTTTCATGTCTTTCAGAAACTATGATAGAGGCTACTGATTCTTTCGAGCAAGCACCTGCTACTCGCTGGACCAGAAACAAACGAGATCAGCAGAATATAGAATCTTATAATGGGGAAGGTAACGTTGCCCTTCCAAACACAGACGGAGTTTCCGCTGATTTGAAATGTTTGCAGGAGTTTGTTGAAAGAAGGGGGAACAAAGGAACTGAAAAGGAAGAAGAAAGGAAGAAGTATCCTCAAGGTTGCTTAATGCTGCACTGCGTACATACATCATGTTTACCAAATGAAAAGGAGGAAGAAGAAAAGGAACAACACAGTATAAAAGGAAAAGGACAAGAAAGGGCAAGATCCTTGTTCTTTAGACAAGTCCAAATGTGGGGAAGATTGAACGCTGGTGGGTTTGAAGAACTGTTACAACAAAATAGGTTTTCTTTCCAGTTTCCAAATGCTGATGAGGTGACATTCTGTGTTTGGTCCACTTTCCTTCCATTAGCTTTAGACTGA	2871	0.4441	MQVLCAHSFRGVSSSVFLQLLLFLFSSCAYGLGAMGPISASFGKYEFFCAIDASGKQDAICWGKNITSSIPPSSSASASVTDSPPMAALSGGEGFMCGIQASTSQAYCWSATKPATDLVPPAYQSYAYSQIAAGKNHVCAIRGSYYSNEDSGIVDCWEIMRTADNSLKWKHSDLYYDHSTSNLALNKIVAGEGFACGAVRDGGLVCWGPTSAYLGVSNVSENFSVLVSGRSSICGLLNVSGDLKCWGDSDSFADPPAGVGLISLSAGARHYCGIRADNHIMECWGSFNSSVVPKGSGFMAIASSDYTTCGVREEDLLIDCWLVNASTAEFDPPLELSSPGICSSSSCNQGEFAFNVSILNEPGLTTLCVRKDLRICSPCGSNCSEGFFLSSPCTENSDRVCTACSLCQNSSCWDVCRLESSPDTVHKKSWHHLRRLLIIIGSATLGFLIMMTCGCILSCLISKKESKSGTAKPEKQADLNVDLHSFPSTTSCPGMPQIFRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWNLRLKISMQTAKALEYLQKELAPPIVHKDLKSSNILLDSEWGARISDFGLLTSGDKDQNGDVQSDVYNFGIVLLEILSGRKAYDGDFMPPNIVEWAVPLIKLGKAAAIIDRSVTLPRIVEPLLKLADIAELAVRHNPSERPAMSEIASWLEQIVKDGLILXCCRSEIFWPGDHAGLCLVLKLFSCLSETMIEATDSFEQAPATRWTRNKRDQQNIESYNGEGNVALPNTDGVSADLKCLQEFVERRGNKGTEKEEERKKYPQGCLMLHCVHTSCLPNEKEEEEKEQHSIKGKGQERARSLFFRQVQMWGRLNAGGFEELLQQNRFSFQFPNADEVTFCVWSTFLPLALD	956

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g1775	956	Gene3D	Transferase(Phosphotransferase) domain 1	589	765	-	-
	Lele13g1775	956	SMART	serkin_6	511	757	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele13g1775	956	FunFam	Serine/threonine-protein kinase-like protein CCR1	666	764	-	-
	Lele13g1775	956	ProSitePatterns	Protein kinases ATP-binding region signature.	517	539	IPR017441	GO:0005524
	Lele13g1775	956	Pfam	Protein tyrosine and serine/threonine kinase	515	665	IPR001245	GO:0004672\|GO:0006468
	Lele13g1775	956	Gene3D	Phosphorylase Kinase; domain 1	478	588	-	-
	Lele13g1775	956	Gene3D	-	171	333	IPR009091	-
	Lele13g1775	956	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	632	644	IPR008271	GO:0004672\|GO:0006468
	Lele13g1775	956	FunFam	serine/threonine-protein kinase-like protein CCR1	480	588	-	-
	Lele13g1775	956	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	15	801	-	-
	Lele13g1775	956	ProSiteProfiles	Protein kinase domain profile.	511	757	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele13g1775	956	ProSiteProfiles	TNFR/NGFR family cysteine-rich region domain profile.	346	401	IPR001368	GO:0005515
	Lele13g1775	956	SUPERFAMILY	Protein kinase-like (PK-like)	485	758	IPR011009	-
	Lele13g1775	956	Gene3D	-	32	170	IPR009091	-
	Lele13g1775	956	SUPERFAMILY	RCC1/BLIP-II	38	288	IPR009091	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g1775	Lele-ChrLele13	26056458	26062712	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g1775	17	759	Receptor kinase-like Gene Family	AT3G59420	31.296	2.15e-110	360

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Lele13g1775		PK_Tyr_Ser-Thr	1.5e-30	CL0016