Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1768 ATGTCTTCCTGCGCCGCTTCCTTGGCCCTTCCTACATTCTCCTCAAGGTTCCGGTCACCATGCTTTGCCGGACGAGCCTTGTTCTCTCCCCATTCTGAATCTTTCTCGTCTCTCCGATTAAAATCGAAGTCCATTTCTTTGTCTGCCTCTTTTCTTCCATTCCACACGCCCTCTTCCTCTCGCTTTATCCCCAATGTTGCTCTTTCTTCTGAGTTCGACCAAGAAGAATTGGTGACGGATGAAGACGAGCCTAGCTACTCCCCCGACCTCAAACTCTTCGTGGGTAATCTTCCCTTCAGCGTTGACAGTGCTCAACTTGCTGAATTGTTCGAGAGCGCTGGAACTGTCGAGATGGTTGAGGTAATTTATGATAAAATGACCGGAAGAAGCAGGGGATTTGGTTTTGTGACCATGTCCACCTCTGAGGAAGTTGAAGCAGCGGCTCAACAATTCAATGGCTATGAACTTGATGGGCGGGCATTGAGAGTAAATTTTGGACCTCCTCCTAAGAAGGAGAATGCCCCTTTCAGAGGTTCAAGAGGTGGTTATGCTTCAAATACTGGACACCGTGTTCATGTAGGTAATCTTGCATGGGGTGTTGATAACTTGGCGCTTGAGAATCTGTTTGCTGAGCAGGGAAAGGTTTTGGAAGCCAAGGTAATTTATGACAGAGAGAGTGGAAGGTCAAGAGGATTTGGATTTGTGACTTACGGCAGTGCTGAAGAGGTCAACGGTGCTGTTGAGTCCTTAGATGGCGTGGACTTGAATGGCAGATCTATTCGAGTGTCATTAGCAGATGCTAAGCCAAGGCGTTCATTTTGA 822 0.4757 MSSCAASLALPTFSSRFRSPCFAGRALFSPHSESFSSLRLKSKSISLSASFLPFHTPSSSRFIPNVALSSEFDQEELVTDEDEPSYSPDLKLFVGNLPFSVDSAQLAELFESAGTVEMVEVIYDKMTGRSRGFGFVTMSTSEEVEAAAQQFNGYELDGRALRVNFGPPPKKENAPFRGSRGGYASNTGHRVHVGNLAWGVDNLALENLFAEQGKVLEAKVIYDRESGRSRGFGFVTYGSAEEVNGAVESLDGVDLNGRSIRVSLADAKPRRSF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1768 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Lele13g1768 273 PANTHER OS02G0815200 PROTEIN 33 271 - -
Lele13g1768 273 SMART rrm1_1 190 263 IPR000504 GO:0003723
Lele13g1768 273 SMART rrm1_1 91 164 IPR000504 GO:0003723
Lele13g1768 273 FunFam Ribonucleoprotein A, chloroplastic 68 189 - -
Lele13g1768 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Lele13g1768 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Lele13g1768 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Lele13g1768 273 Gene3D - 187 273 IPR012677 -
Lele13g1768 273 Gene3D - 69 186 IPR012677 -
Lele13g1768 273 CDD RRM_HP0827_like 91 168 - -
Lele13g1768 273 SUPERFAMILY RNA-binding domain, RBD 89 269 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1768 Lele-ChrLele13 26021133 26022880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1768 191 272 Eukaryotic Initiation Factors Gene Family AT1G49760 34.524 4.00e-08 52.0