Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1745 ATGGTTTGTATTGTCAACAGAGCAGGTCCATTGACGCCTGGCAAGTGTAAAGAAGGGCCATGGTCTCCTGAAGAAGATACCAAGCTAAGGGAGTATATAGAGAAACATGGCACTGGTGGCAACGGGATTGCTCTCCCTCAAAAAGCTGGTTTGAAACGATGTGGGAAAAGTTGCAGACTAAGATGGCTTAACTATCTCAGACCCGACATCAAGCACGGCCAGTTCTCTGCCGATGAAGACAGAATCATCTGCAGCCTCTTCGCTAGCTTTGGAAGCAGGTGGTCGATAATAGCAGCTCGTTTACCTGGGAGGACCGACAACGATATCAAGAATTATTGGAACACCAAGCTTAAGAAGAAAATGATGCTCATGAATAATCCTTTAGTTCAGGGGAATAAGCCTAAGCCTCATCATCACCAAACCACCGTTTTAACCGTTCTTCAAAATTCCACACCAGCTTCACCATTATCATTCTCAGCCAGCTACCACCATGCCAACGTCACTTTCATGGGACTCATTCAGAATCAGCCAGTGTCCATGGTTGGTGGTAAAGCTGCTGCTTACAGCTCTTCTGATGGAAGCTGCAATAACCCGATCACTCATAATATCAAAGAAACAGAGTTTCTGTACGGAAGAGATGGAACTTTGATCCAACAGGTTAGTGCTACTTGA 672 0.4539 MVCIVNRAGPLTPGKCKEGPWSPEEDTKLREYIEKHGTGGNGIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGQFSADEDRIICSLFASFGSRWSIIAARLPGRTDNDIKNYWNTKLKKKMMLMNNPLVQGNKPKPHHHQTTVLTVLQNSTPASPLSFSASYHHANVTFMGLIQNQPVSMVGGKAAAYSSSDGSCNNPITHNIKETEFLYGRDGTLIQQVSAT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1745 223 CDD SANT 75 117 IPR001005 -
Lele13g1745 223 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Lele13g1745 223 ProSiteProfiles Myb-like domain profile. 17 66 IPR001005 -
Lele13g1745 223 PANTHER OS09G0431300 PROTEIN 16 154 - -
Lele13g1745 223 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Lele13g1745 223 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Lele13g1745 223 SMART sant 17 68 IPR001005 -
Lele13g1745 223 SMART sant 71 119 IPR001005 -
Lele13g1745 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Lele13g1745 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
Lele13g1745 223 FunFam Transcription factor RAX3 13 72 - -
Lele13g1745 223 Gene3D - 12 72 - -
Lele13g1745 223 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Lele13g1745 223 Gene3D - 73 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1745 Lele-ChrLele13 25881196 25883399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1745 7 122 MYB Transcription Factor Family AT5G57620 76.724 2.64e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele13g1745 Myb_DNA-binding 4.7e-11 CL0123