Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1722 ATGCCACTCACCTTCTCGCTCGCTCTCCCCCCACCGCCCACTGTTATTCCACCTTCCCAATTTGAGATTCATGCGTGCAAAGCGTATAAGCGAGCAGCACAATACATTTGCCTGGAAAATGGGAAGAGCCTGCTTGAGCTATTGAGAGCGTGCAGAGGAGCTCCCTTACATACTCTGGAGGCGACAATTCAAAACGTTGTTTGTTCTCCACCTGATGAAAAGTATTTCACTTGTAAAATGTGCAAGGCTATTATTTCCATAGTATGTTTCCCTCCTTCCTGTGTGGAAAGAGCAGGGTCTATATGCAGTTCTTGCAAGGAGTCCAAGGAATCTCAAGACAGTTCCATCGATAAAGTGGGCAAAAAAGTCAGGTCCCCTAGACCGCTCTCTGTCTCTAAGCAATCTGATACTTCTGAGAAGCGTATCTCTTCACAGATTAAGAGACACTGGAAGAAAAGAACAAAGTTGGTCCTCAAAATTGTCAGTAAAATTGAAGACTGCAAGAACTACTTCAAATTCAATGCGTTTATCTTCACCAAACAAGAGTCACTGGAGGGTCACCAAAAACAGTTGCATAAGTTAGTCTTTAAGGAAGGTGGATTGCCTGATGGAGCCGAAGTAGCTTATTATGCACGTGGACAGAAACTGCTCGAGGGTTACAAAAAGGGCTTTGGAATAATGTGTCGATGCTGCAACTCTGAGGTCAGCCCCTCACAGTTTGAGGTTCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCCATATCTCTTTCAAAAGATCGCAAATACTCTGCAAAGGATAATGATGATTTATGCGTTATTTGTTGGGATGGCGGAGATCTGTTGCTTTGTGATGGATGCCCAAGGGCTTTTCATAAAGAATGTGCATCTCTGTCAAGTATTCCGCGAGGTAATTGGTACTGTAAGGTTTGCCAAAACATGTTCCAAAGAGAAAGGTTTGTGGCGCACAATGCCAATGCTGTGGCAGCTGGACGGGTTGAAGGAGTTGATCCTATTGAGCAGATAACCAAGAGATGTGTGCGCATTGTTGAAGATGTTGATGCTGAGCTCAATGGATGTGCTTTATGCAGGGCTTGTGACTTCAGCAAATCAGGATTTGGTCCACGAACAATAATAATTTGTGATCAGTGCGATAAAGAATTTCATGTTGGTTGCTTGAGGGATCATAAAATGTCATTTTTGAAGGAATTGCCAGAAGGGGATTGGTTTTGTTGCCATGATTGCTCAACCATACATTCTACTTTTCAGAGCCTCCTGGTTAGGGGAGCTGAAAAACTTCCAGAACCTCTCTTGGATGTTATAAAGAAGAAGCAAGAGGAAAAAGGTTTAGAATCCCTTAGTGATATTGATGTGAAATGGAGGCTTCTTAAGGGAAAAATTGCTTCTCCTGAAACTAGGCCATTTCTTTTGCAGGCTGTCTCAATCTTTCATGAATGCTTTGATCGTATAGTTGATTCAATTACTGGACGCAATCTTATTACGGCCATGATATATGGAAGGACTGTGCGGAGACAAGAGTTTGGGGCAATGCATTGTGCACTATTAATGGTCAATTCTACTGTGGTATCCGCTGCCTTGCTTCGAATTTTTGGCAGTGATTTGGCAGAACTCCCTCTAGTTGCAACTCGTAGTGTTAACCATGGAAAGGGGTACTTCCAAATACTATACTCGTGCATTGAGAAATTGCTGTCTTCTTTAAACGTGAAGAACCTTGTGTTGCCAGCTACGGCTACCGCAGAGTCCATTTGGATTGAGAAATTTGGGTTTGTAAAGATGACACCGGATGAGGTATTTAGATTGGTTGTTTCATTACCTACAAACGTTGTGGTTAACATCTTGGCACTGCTCCAACTTAATTTGACTGGGCTAACTCGTTATGCTGCAGCTTTGCAACTACAGAAGGAGCTACCAGCAGATGGTGATATTTCAAGGAACATCCATGCTTCGTAA 2013 0.4317 MPLTFSLALPPPPTVIPPSQFEIHACKAYKRAAQYICLENGKSLLELLRACRGAPLHTLEATIQNVVCSPPDEKYFTCKMCKAIISIVCFPPSCVERAGSICSSCKESKESQDSSIDKVGKKVRSPRPLSVSKQSDTSEKRISSQIKRHWKKRTKLVLKIVSKIEDCKNYFKFNAFIFTKQESLEGHQKQLHKLVFKEGGLPDGAEVAYYARGQKLLEGYKKGFGIMCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCVICWDGGDLLLCDGCPRAFHKECASLSSIPRGNWYCKVCQNMFQRERFVAHNANAVAAGRVEGVDPIEQITKRCVRIVEDVDAELNGCALCRACDFSKSGFGPRTIIICDQCDKEFHVGCLRDHKMSFLKELPEGDWFCCHDCSTIHSTFQSLLVRGAEKLPEPLLDVIKKKQEEKGLESLSDIDVKWRLLKGKIASPETRPFLLQAVSIFHECFDRIVDSITGRNLITAMIYGRTVRRQEFGAMHCALLMVNSTVVSAALLRIFGSDLAELPLVATRSVNHGKGYFQILYSCIEKLLSSLNVKNLVLPATATAESIWIEKFGFVKMTPDEVFRLVVSLPTNVVVNILALLQLNLTGLTRYAAALQLQKELPADGDISRNIHAS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1722 670 Pfam PHD-finger 286 327 IPR019787 -
Lele13g1722 670 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 272 349 - -
Lele13g1722 670 MobiDBLite consensus disorder prediction 116 144 - -
Lele13g1722 670 SUPERFAMILY FYVE/PHD zinc finger 367 429 IPR011011 -
Lele13g1722 670 SMART PHD_3 285 326 IPR001965 -
Lele13g1722 670 SMART PHD_3 376 430 IPR001965 -
Lele13g1722 670 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 529 615 IPR016181 -
Lele13g1722 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 432 IPR013083 -
Lele13g1722 670 PANTHER AUTOIMMUNE REGULATOR 15 618 - -
Lele13g1722 670 SUPERFAMILY FYVE/PHD zinc finger 272 330 IPR011011 -
Lele13g1722 670 ProSiteProfiles Zinc finger PHD-type profile. 283 328 IPR019787 -
Lele13g1722 670 Pfam Tify domain binding domain 15 51 IPR032308 -
Lele13g1722 670 Pfam Tify domain binding domain 219 269 IPR032308 -
Lele13g1722 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 361 IPR013083 -
Lele13g1722 670 ProSiteProfiles Zinc finger PHD-type profile. 374 432 IPR019787 -
Lele13g1722 670 CDD PHD1_AIRE 285 325 - -
Lele13g1722 670 Gene3D - 475 623 - -
Lele13g1722 670 ProSitePatterns Zinc finger PHD-type signature. 286 325 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1722 Lele-ChrLele13 25725167 25737762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1722 14 622 PHD Transcription Factor Family AT2G36720 50.847 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele13g1722 TDBD 4.3e-17 No_clan