Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1716 ATGAGCATTATCTTGTTTACATACAGGGGATCACCCGATAGACCATCTCAGCCACGCCCTCAGGAAGGTTCTACTTCGACACATTCCTGGTACCCTCCGTCTGTAGTGACCTCACCCAGTTCTTCTAGGCCTACAACACCAAGTGGCTCTTCCTCAAGCAGCTATGGTTCACAGAGACCTACAGAAAGATTGCAGTCTCCTTCACTTGTTTCTCCCACCGAAGCTGCAGGAGTTATTGCTCATCTGAAGGACAAAAGTGCTGATGAGCTACGGAAGCTTTTATCTGACAAAGATGCATACCAGCAATTTTTACTTTCGCTTGATCAGGTCAAAATTCAAAACAATTTGAAAGACGAACTTTGCAAGGAGACTACACAGCTTGCAGAGGAAAATCTGCAAAAGGAACCTCGTATTATGGAACTTAAAAATCAGTGTAGAATAATTCGGACAACTGAGTTAGCCGCTGCTCAAGAGAAACTAAATGAACTTGAGAAGCAGAAAGAACAAGCATTGAAGTTCAGTTCTCCAGCTTCCCTTCTCCAACAGCTTCAAGAGGCTATGAGTAAGACGGAAGAGGAATCTGAAAATCTGCACCAGCAACTCCTTGATAGAGAAATTGATCTTGGAGCTTTCTTGCAGAAATACAAGAAGCTTCGTACCAATCACCACAAGAGAGCTCTCTTGCATCTTGCGGCTAGAACATCAAGGTGTTTTGAGTGCGCATTTGTGAAGCATGTTGATCTTGACACTATCAATGAGGTTGGGTTAGAGATCCGGGCTTTCAAAGAGCTATGGAAATTGTTGATGAGCGATTCGGGTCGATCATGTTACGGTTTGAAGAACGTGGAGGCTGCGCATGAGATGATGGCAGTCGAGATGCTTCTGATAAAGGATGAACTGTACAGGAGTGAAGAGACGGGGACGAGGCAAAAATACTTGAGTTCGGTTAAATCAGTGAAAGAACAGTTAGCCCATTTAACGGGCGTTGCTGCAAATCTGAGATTTCCCTTGCCTCATCTTCAACAAACGGATGATTGA 1038 0.4422 MSIILFTYRGSPDRPSQPRPQEGSTSTHSWYPPSVVTSPSSSRPTTPSGSSSSSYGSQRPTERLQSPSLVSPTEAAGVIAHLKDKSADELRKLLSDKDAYQQFLLSLDQVKIQNNLKDELCKETTQLAEENLQKEPRIMELKNQCRIIRTTELAAAQEKLNELEKQKEQALKFSSPASLLQQLQEAMSKTEEESENLHQQLLDREIDLGAFLQKYKKLRTNHHKRALLHLAARTSRCFECAFVKHVDLDTINEVGLEIRAFKELWKLLMSDSGRSCYGLKNVEAAHEMMAVEMLLIKDELYRSEETGTRQKYLSSVKSVKEQLAHLTGVAANLRFPLPHLQQTDD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1716 345 Pfam Modifier of rudimentary (Mod(r)) protein 83 226 IPR009851 -
Lele13g1716 345 Pfam eRF1 domain 3 257 311 IPR005142 -
Lele13g1716 345 Coils Coil 146 173 - -
Lele13g1716 345 MobiDBLite consensus disorder prediction 1 71 - -
Lele13g1716 345 MobiDBLite consensus disorder prediction 17 71 - -
Lele13g1716 345 Coils Coil 180 200 - -
Lele13g1716 345 SUPERFAMILY Endosomal sorting complex assembly domain 176 225 IPR037202 -
Lele13g1716 345 ProSiteProfiles VPS37 C-terminal domain profile. 157 240 IPR009851 -
Lele13g1716 345 Gene3D Helix hairpin bin 159 231 IPR029012 -
Lele13g1716 345 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 17 235 - -
Lele13g1716 345 Gene3D - 253 345 IPR029064 -
Lele13g1716 345 SUPERFAMILY L30e-like 257 340 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1716 Lele-ChrLele13 25685071 25689694 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1005 06 6233712 6235953 Lele13g1716 13 25685071 25689694 CCT
Lele08g0990 08 6287745 6289918 Lele13g1716 13 25685071 25689694 CCT
Lele13g1716 13 25685071 25689694 Lele15g0700 15 4034432 4036879 hybridization
Lele13g1716 13 25685071 25689694 Lele16g0703 16 3958582 3962781 hybridization