Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1715 ATGAAGCCTGTTCTGAAGGCCTGGATCCTGCCAGGCTGCTACTACTACAGTTCCGCGTTCTCTCTCGATCCACGCTCAGTCCCCTCCTCGCATGCTGCACACTCCGCTATGGCGGAATCAGCATCCGGTGACTCCTCCTCCACCACTGCGCCTCCGGAGAGCAAACCGGTGGTCACCGAGCATAAAAGTTGGGCCGATGAAGTTGAGGAAGAAGTTCCACAAGAAACGAATGCCTCCCCTAGTTCATCATCAGTGTCCTCGCTTAACGTTGACGGATTAGCCATCGACGAGAATAAGAAGACTAGTAAGTTCTTGGACGAACCGGAGGACTCCAACATTCAAGCGGTTACTTCTGGCGATACTCCATATACCTCAGCGAGCACCTTTGAAGATTTGAATCTCTCTCCAGAGCTGCTAAAAGGATTGTATGTTGAGATGAAATTTCAGAAGCCTAGCAAAATTCAAGCTATCAGTTTGCCAATGATCTTGAGCCCTCCTTTTAAGGATCTGATTGCACAGGCACATAATGGTTCAGGCAAGACAACATGTTTTGTGCTTGGGATGCTAAGTCGTGTTGACCCCAACCTGAAGGCTCCTCAAGCTCTTTGCATTTGTCCAACTCGAGAATTAGCTATTCAGAATACGGAAGTTCTTCGAAAGATGGGGAAATACACGGGGATTATTTCAGAATGCGCCATACCAACAGACAGCAGAGATTCTATTCATATTGCAAAATGGGAACCTATTATGGCACAAGTAGTAATTGGGACTCCTGGAACAATTAAGAAGTGGATGTCATATAAGAAACTGAGTTCTTCCAGATTAAGCATTCTTGTCTTCGATGAGGCTGATCAAATGCTTGCAGAGGATGGTTTTAAAGATGATTCTTTGAGGATAATGAAAGATATAGAAAGAGTCAATAATAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGAAATTGTCAAGAATTTTGTTTCAAGAATAGTTAAGAAGGATCACAATCAACTTTTTGTAAAGAAAGAAGAGCTATCTTTAGACGCAGTGAAGCAATACAGGGTGAATTGTCTTGATGAACTCTCTAAAATTGAAGTGATCAAAGATTACATCTTTGAAATAGGAGAGAATGTGGGCCAAACTATCATATTTGTGCGCACAAGAAATAGTGCAAGCATGTTGCACAAAGCGCTCGCTGATTTGGGCTATGAGGTCACTTCTATTCAAGGCGCTCTTCAGCATGACGAGAGAGATAAGATTGTCAAAGAGTTCAGAGATGGTTTGACTCAAGTTCTGATATCAACTGATGTTCTTGCCCGAGGCTTTGATCAACAACAGGTTAATTTGGTTATTAATTATGATCTTCCATTGAAACATACTGCGGAGTATACTCGTGGGCGTGAACAGGAACCCGATTATGAGGTGTATTTGCATAGGGTTGGGAGGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAACCTTATATGTGGTGAAAGGGATGCAAATCTCATGGCGAAGATTGAGAGGCACTTTGGCGCCCATGTAACTGAGGTCCGGGAAAAAAGCGTTGAAGATTATAAAGGAGCTCTTAGGGAGGCGGGTTTATTGCAATGA 1617 0.4354 MKPVLKAWILPGCYYYSSAFSLDPRSVPSSHAAHSAMAESASGDSSSTTAPPESKPVVTEHKSWADEVEEEVPQETNASPSSSSVSSLNVDGLAIDENKKTSKFLDEPEDSNIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPFKDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNTEVLRKMGKYTGIISECAIPTDSRDSIHIAKWEPIMAQVVIGTPGTIKKWMSYKKLSSSRLSILVFDEADQMLAEDGFKDDSLRIMKDIERVNNNCQVLLFSATFNEIVKNFVSRIVKKDHNQLFVKKEELSLDAVKQYRVNCLDELSKIEVIKDYIFEIGENVGQTIIFVRTRNSASMLHKALADLGYEVTSIQGALQHDERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKHTAEYTRGREQEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDANLMAKIERHFGAHVTEVREKSVEDYKGALREAGLLQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1715 538 SMART ultradead3 147 353 IPR014001 -
Lele13g1715 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 502 IPR027417 -
Lele13g1715 538 MobiDBLite consensus disorder prediction 100 119 - -
Lele13g1715 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 528 IPR001650 -
Lele13g1715 538 MobiDBLite consensus disorder prediction 33 54 - -
Lele13g1715 538 Gene3D - 347 530 IPR027417 -
Lele13g1715 538 Pfam DEAD/DEAH box helicase 153 325 IPR011545 GO:0003676|GO:0005524
Lele13g1715 538 SMART helicmild6 392 487 IPR001650 -
Lele13g1715 538 MobiDBLite consensus disorder prediction 27 88 - -
Lele13g1715 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 156 IPR014014 GO:0003724
Lele13g1715 538 MobiDBLite consensus disorder prediction 74 88 - -
Lele13g1715 538 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 508 - -
Lele13g1715 538 CDD SF2_C_DEAD 350 496 - -
Lele13g1715 538 CDD DEADc_DDX19_DDX25 134 333 - -
Lele13g1715 538 Gene3D - 106 344 IPR027417 -
Lele13g1715 538 Pfam Helicase conserved C-terminal domain 363 487 IPR001650 -
Lele13g1715 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 337 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1715 Lele-ChrLele13 25679458 25684639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1715 120 519 Eukaryotic Initiation Factors Gene Family AT1G72730 36.408 1.98e-71 232