Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1713 ATGGCGGTTCCTTCAACTGCCACCGCCTCACCGGCTTCGCTTTACGTCGGCGACCTCCACCCTGACGTCAACGATGAACAGCTATTCGAAGTGTTCTCAGAGTTTAAGAGCCTCACTTCTGTTCGGATCTGTAGGGACTCCTCCAGCGGCAGGTCACTCTGTTATGGCTATCTGAACTTCACCTCTCCTGAAGATGCTAGTCGTGCTCTTGAGGTGAAGAATCATTCTAAACTGAACGGGAAAATGATGAGAGTCATGTGGTCACATCGCGACCCCGAAGCAAGAAAAAGTGGCATAGCGAACGTATTTGTTAAGAACTTAGCTGAACCTATAGATAATGAGGGATTATACGGGTTGTTTCAAAACTTCGGGAAAATTTTGTCCAGCAAAGTTGTCACGTTTGAAGATGGGAAGAGCAAAGGGTATGGCTTCGTTCAATTTGAGTCAGAGGACTCTGCAAATGCAGCCATTGAAAAGTTGAATGGCTCCACTATTAGAGATAAACAGATATATGTTGGTAAGTTTGTCAAAAAAAGTGAACGCGTCTTGCCTGGTCCTGATTCCAAGTTCACAAATTTGTTCCTGAAAAATTTGGACCCAGAGATTACAGAGGACCTTCTGCAGGAAAAGTTTGCCCCTTTTGGCAACATTGTTAATTTGGTTATTGCCAAGGACTACAATGGAGTATCAAATGGTTTCGGCTTTGTGAACTATGATAAACCTGATGATGCTAAACGGGCAATGGAAACCATGCATGGATCACGACTAGGCTCGAAGATTATATATGTAGCCAGAGCACAGAAGAAGGCTGAGCGTGAAAATATCTTGCGCCGTCAGTTTGAGGAGAAACGTAAGGAGCAGATATTGAAATATAAGGGATCAAACATTTATGTGAAAAACATTGACGTTGATGTCAATGACGTAGAACTAAGAGATCATTTTAGTTCATGCGGTACGATAATATCTGCCAAAGTTATGCGGGACGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCCACTCCCGAGGAGGCCAATAAAGCTGTGGACTATTTCCATGGATGTGTGTTTCATCGTAAACCGCTATATGTTGCTATTGCTCAGAAGAAGGAAGATAGGCTAGCACGAGTAAACGTCCGGTATGCACAGGGAATAGCAGGACTAGCTGGACCTTCAACAGCTGTCATACATGGTGGATATCCTCCTTACTACTACGCAGCTACTGGTGTTGTTTCACAGCTGCCACCTCAAACAGAGCTAGTATATCAACCGCTGGGATTGAGGCCAGGATGGGGGCCTAACGGCTTTGCACCTCCTACCAGACCAGTTCCACAGGCTCTATTTTCTGTTCCTGCTACTTCTATGAGGCCGAACAGACAAAACAGGAGCAGGATGAATGGGCAGGCAATTTCGCAGGGGAAAGCTTCCTTGGGTACTTTTATGCCACAACAGTCAATGGCCGCATCAAAAGAATCAACTACTCGGCAGTTCCATGAACTGCAGAGCACTGGGCAGACTAAGTATGTGGCTAGAGAGCGCCAAGGTGAGATGGAAAAAGGATCTGAAGACCCATCCTATGGTTCTAACTCTATTGTTGGGAGTCAAGGGTCGAAAATGCTCCATTGCATGCTTGCTGCTGCCACTCCTGAGCAGCAAAAGCAACTCCTTGGCGAGCATATTTACCCACTGATCCAGAAACTCAAGGTAATGCCATTGCATTATTTCTATTCTATCTCGTTAGCCTTTGAGGTTAGATTTCTTGAATTGTGA 1776 0.4516 MAVPSTATASPASLYVGDLHPDVNDEQLFEVFSEFKSLTSVRICRDSSSGRSLCYGYLNFTSPEDASRALEVKNHSKLNGKMMRVMWSHRDPEARKSGIANVFVKNLAEPIDNEGLYGLFQNFGKILSSKVVTFEDGKSKGYGFVQFESEDSANAAIEKLNGSTIRDKQIYVGKFVKKSERVLPGPDSKFTNLFLKNLDPEITEDLLQEKFAPFGNIVNLVIAKDYNGVSNGFGFVNYDKPDDAKRAMETMHGSRLGSKIIYVARAQKKAERENILRRQFEEKRKEQILKYKGSNIYVKNIDVDVNDVELRDHFSSCGTIISAKVMRDDKGISKGFGFVCFSTPEEANKAVDYFHGCVFHRKPLYVAIAQKKEDRLARVNVRYAQGIAGLAGPSTAVIHGGYPPYYYAATGVVSQLPPQTELVYQPLGLRPGWGPNGFAPPTRPVPQALFSVPATSMRPNRQNRSRMNGQAISQGKASLGTFMPQQSMAASKESTTRQFHELQSTGQTKYVARERQGEMEKGSEDPSYGSNSIVGSQGSKMLHCMLAAATPEQQKQLLGEHIYPLIQKLKVMPLHYFYSISLAFEVRFLEL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1713 591 SMART rrm1_1 13 86 IPR000504 GO:0003723
Lele13g1713 591 SMART rrm1_1 295 367 IPR000504 GO:0003723
Lele13g1713 591 SMART rrm1_1 192 264 IPR000504 GO:0003723
Lele13g1713 591 SMART rrm1_1 101 173 IPR000504 GO:0003723
Lele13g1713 591 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 570 IPR006515 GO:0003723
Lele13g1713 591 Coils Coil 263 283 - -
Lele13g1713 591 CDD RRM1_I_PABPs 13 92 - -
Lele13g1713 591 SMART rrm2_1 13 86 IPR003954 GO:0003676
Lele13g1713 591 SMART rrm2_1 192 264 IPR003954 GO:0003676
Lele13g1713 591 SMART rrm2_1 101 173 IPR003954 GO:0003676
Lele13g1713 591 FunFam Polyadenylate-binding protein 277 385 - -
Lele13g1713 591 SUPERFAMILY PABC (PABP) domain 542 569 IPR036053 GO:0003723
Lele13g1713 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Lele13g1713 591 Gene3D - 282 382 IPR012677 -
Lele13g1713 591 PANTHER RNA BINDING PROTEIN 12 74 - -
Lele13g1713 591 Gene3D - 536 578 - -
Lele13g1713 591 FunFam Polyadenylate-binding protein 97 181 - -
Lele13g1713 591 Gene3D - 180 281 IPR012677 -
Lele13g1713 591 Gene3D - 101 179 IPR012677 -
Lele13g1713 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Lele13g1713 591 SUPERFAMILY RNA-binding domain, RBD 12 180 IPR035979 GO:0003676
Lele13g1713 591 SUPERFAMILY RNA-binding domain, RBD 190 373 IPR035979 GO:0003676
Lele13g1713 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Lele13g1713 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Lele13g1713 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Lele13g1713 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Lele13g1713 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Lele13g1713 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Lele13g1713 591 FunFam Polyadenylate-binding protein 4 96 - -
Lele13g1713 591 FunFam Polyadenylate-binding protein 182 276 - -
Lele13g1713 591 CDD RRM4_I_PABPs 293 371 - -
Lele13g1713 591 CDD RRM2_I_PABPs 98 174 IPR045305 -
Lele13g1713 591 Gene3D - 3 100 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1713 Lele-ChrLele13 25655055 25659144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1713 12 570 Eukaryotic Initiation Factors Gene Family AT2G36660 49.734 1.33e-179 519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1000 06 6203040 6207861 Lele13g1713 13 25655055 25659144 CCT
Lele07g1180 07 7125059 7129507 Lele13g1713 13 25655055 25659144 CCT
Lele08g0987 08 6263255 6267838 Lele13g1713 13 25655055 25659144 CCT
Lele05g1136 05 7091145 7094812 Lele13g1713 13 25655055 25659144 CCT
Lele13g1713 13 25655055 25659144 Lele15g0703 15 4046444 4063908 hybridization
Lele13g1713 13 25655055 25659144 Lele16g0706 16 3978064 3982239 hybridization