Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1704 ATGGCAGACAAGCAAGAGGATCGGACTGAGAGCAGCGATTTCACTTCAGAGGACGAAGGCACCGAGGACTATCGACGGGGAGGCTACCACGCGGTGCGAATCGGCGATACCTTCAAGAATGGTCGCTATGCTGTTCAGAGCAAGCTGGTTTTGCAGAGATACGTGGCACTGAAAGTTCAAAAGAGCGCTCAGCATTACACAGAAGCAGCCATGGACGAGATAACCATTTTACAACAGATCGCAGATGGAGACCCAGAAGATAAAAAGTTTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGTCCCAATGGACAACATGTTTGTATGGTGTTTGAATACCTTGGGGATAATCTTTTAACGCTTATCAAATATTCTGATTACCGGGGATTGCCAATCAACATGGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTAGATTACTTACATAAGCAGCTTTCTATAATACATACTGACTTGAAGCCTGAGAACATCCTCCTATTATCAATGATTGATCCATCTAAGGATCCTAGAAGGTCTGGTGCTCCCTTAATTCTACCAAACGCTAAAGATAAAACAGCACTTGAATCTGGAATTAGGAAAGAATTGAAATCATCAAATGGGGAATTAATGCGGAATCATAAAAAGATTAAAAGGAAAGCTAAGCAGGCAGCTCAGGGATATGTAGAGAAGGAAGCTTCCGAGGAAGTTGTGGGTGATCCTGAGACATCTGGTGCTGTAGAATCTTCTGCAAATGCGATGCTAAATGCAGGTTCTGTAGGAGAACAACCTTCTAGTTCTGCAGGCACCAGTAGGTTGTCAGATGATGACAGGACAGGGGTAAATTGGTCAAAAAACCAGGGTAACAAAAGAGGAAGCCGGTCATTGAGGCAGAAGCTGCTGAAATCAGTTGATCTCAAGTGCAAATTAGTTGACTTTGGCAACGCTTGTTGGACATATAAACAGTTTACAAATGATATTCAAACAAGACAATATCGGTGTCCAGAAGTCATCCTTGGATCAAAATACTCTACGTCAGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGGGATGTACTATTTGATCCTCATAGTGGTGACAATTTTGATAGAGATGAGGACCACTTAGCACTAATGATGGAACTTCTGGGCATGATGCCGCGTAAGATTGCACTAGGGGGCCGTTACTCACGTGATTTTTTCAATAGATATGGGGATCTGAGGCACATCCGTCGTTTGCGATTCTGGCCCTTGAGCAAAGTTCTCTTGGAGAAATATGAATTCCATGAGCGAGATGCCAGTGGCATGGCCGACTTTTTGGTTCCTATCCTCAACTTTGTTCCTGAGAAACGACCAACAGCCGGTCAGTGCCTTCTGCATCCGTGGATCAATGCCGGTCCCCGCCTTTTGGAGCCATCGGTGCCATCTTCTAACCACAATTCGGCTGCAGATGGTGCTATTTCTGACCAAAAGAAAAGGGACAAGGACGATAGAGAGGCCATGGAGGCAGGGATGGGGAATATTGCCATCAATTCAGATTCTAAACCACACGGATTTGTCAGCGAAAGCCTGTGA 1593 0.4432 MADKQEDRTESSDFTSEDEGTEDYRRGGYHAVRIGDTFKNGRYAVQSKLVLQRYVALKVQKSAQHYTEAAMDEITILQQIADGDPEDKKFVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRRSGAPLILPNAKDKTALESGIRKELKSSNGELMRNHKKIKRKAKQAAQGYVEKEASEEVVGDPETSGAVESSANAMLNAGSVGEQPSSSAGTSRLSDDDRTGVNWSKNQGNKRGSRSLRQKLLKSVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLSKVLLEKYEFHERDASGMADFLVPILNFVPEKRPTAGQCLLHPWINAGPRLLEPSVPSSNHNSAADGAISDQKKRDKDDREAMEAGMGNIAINSDSKPHGFVSESL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1704 530 SUPERFAMILY Protein kinase-like (PK-like) 50 481 IPR011009 -
Lele13g1704 530 SMART serkin_6 32 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1704 530 Gene3D Phosphorylase Kinase; domain 1 23 50 - -
Lele13g1704 530 MobiDBLite consensus disorder prediction 258 295 - -
Lele13g1704 530 Pfam Protein kinase domain 52 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1704 530 Pfam Protein kinase domain 305 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1704 530 CDD STKc_SRPK 32 469 - -
Lele13g1704 530 Gene3D Transferase(Phosphotransferase) domain 1 112 470 - -
Lele13g1704 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Lele13g1704 530 Gene3D Phosphorylase Kinase; domain 1 51 111 - -
Lele13g1704 530 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 6 495 - -
Lele13g1704 530 MobiDBLite consensus disorder prediction 476 530 - -
Lele13g1704 530 MobiDBLite consensus disorder prediction 1 23 - -
Lele13g1704 530 Coils Coil 201 221 - -
Lele13g1704 530 MobiDBLite consensus disorder prediction 492 508 - -
Lele13g1704 530 ProSiteProfiles Protein kinase domain profile. 18 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1704 530 MobiDBLite consensus disorder prediction 477 491 - -
Lele13g1704 530 FunFam Serine/threonine-protein kinase SRPK-like protein 299 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1704 Lele-ChrLele13 25616624 25619634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1704 9 517 EF-hand Containing Proteins AT5G22840 65.019 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele13g1704 Pkinase 2.2e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1704 13 25616624 25619634 Lele15g0710 15 4094896 4097913 hybridization
Lele13g1704 13 25616624 25619634 Lele16g0715 16 4030427 4033479 hybridization