Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1689 ATGTTTGGCAGCCGCAGAAGCGAATCGTCCACTGGGCGTCACCCCGTTTACAAGGGAGTGAGGCGTAGGAGCAGTGGCAAATGGGTGTCTGAAATTCGGGAGCCCAAGAAGCCCAACCGGATTTGGTTAGGCACATTCCCTACCCCTGAAATGGCTGCCGTCGCCTACGACGTCGCCGCCCTTGCTCTTAAGGGTGAGCGCGCCGACCTTAACTTCCCCGACTCCGCCTCTTCCTTGCCCGTCCCTGCGTCCACCTTTCCCTCTGATATTCAGGTGGCTGCAGCCAGCGCCGCGGCCGCCGTGGGGGCTGCTAAGGATGCTTTGTCTGCGACCACTGGGGAGTCATCTTCTTCGGCGTCGCTGAAAGACAAGGAAGAGGGAGCGGCGACGGAGTTTGTGGATGAGGATTTGATCTTCGATATGCCAAATGTGCTGCTCAATATGGCAGAAGGAATGATGCTCTCTCCTCCTCCACTGGACTGTGATGCTGTTGCTCCCCCAGATTACATGCCTCAGGATCCATACCTTTGGAACTTCCGCCCCTAA 546 0.5751 MFGSRRSESSTGRHPVYKGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGERADLNFPDSASSLPVPASTFPSDIQVAAASAAAAVGAAKDALSATTGESSSSASLKDKEEGAATEFVDEDLIFDMPNVLLNMAEGMMLSPPPLDCDAVAPPDYMPQDPYLWNFRP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1689 181 MobiDBLite consensus disorder prediction 1 29 - -
Lele13g1689 181 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Lele13g1689 181 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Lele13g1689 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 165 IPR045277 GO:0003700
Lele13g1689 181 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Lele13g1689 181 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Lele13g1689 181 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Lele13g1689 181 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Lele13g1689 181 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Lele13g1689 181 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lele13g1689 181 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1689 Lele-ChrLele13 25515797 25516342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1689 7 179 AP2-EREBP Transcription Factor Family AT2G36450 62.570 1.46e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g1689 AP2 1.3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0966 06 5977716 5980387 Lele13g1689 13 25515797 25516342 CCT
Lele07g1141 07 6895575 6898253 Lele13g1689 13 25515797 25516342 CCT
Lele08g0954 08 6022503 6023780 Lele13g1689 13 25515797 25516342 CCT
Lele05g1099 05 6843841 6844443 Lele13g1689 13 25515797 25516342 CCT
Lele13g1689 13 25515797 25516342 Lele05g2678 05 42670402 42673230 CCT
Lele13g1689 13 25515797 25516342 Lele06g2664 06 34504455 34514063 CCT
Lele13g1689 13 25515797 25516342 Lele07g2701 07 32523170 32534439 CCT
Lele13g1689 13 25515797 25516342 Lele08g2604 08 31776609 31787200 CCT
Lele13g1689 13 25515797 25516342 Lele15g0728 15 4208018 4208563 hybridization
Lele13g1689 13 25515797 25516342 Lele16g0733 16 4148732 4149277 hybridization