Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1657 ATGGAGAACTTCAATGAAGGTTTTGAACTGAAGGAATTTCAGACACTGGAAGGTCACTCCGATAGGGTTTGGAGCTTGGCTTGGAACCCTGCTACCGGGCATTCTGGAATTCCGTATGTCTTCGCGTCCTGTAGTGGCGACAAAACCGTTCGAATCTGGGAGCAGAATCTCTCCACTGGTCTTTGGGGATGCAAGGCAGTTTTGGAAGAAACACACACTAGAACAGTTCGATCGTGTGCTTGGTCACCATCTGGAAAACTCTTGGCTACGTCGAGTTTTGATGCTACTACTGCTATCTGGGAAAATGTTGGGGGTAATTTTGAGTGCGTCTCTACTCTAGAGGGTCATGAAAATGAAGTGAAGAGCGTATCTTGGAATGCATCTGGATCTCTGCTTGCAACATGTGGCAGAGATAAATCTGTTTGGATATGGGAAGTGCAGCCAGGTAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACATACACAAGATGTGAAGATGGTGCAATGGCATCCAACAATGGATATATTGTTTTCATGTAGCTATGATAATAAAATTAAGGTTTGGGCAGATGAAGGTGACAGTGATGAGTGGCAGTGTGTCCAGACTCTAGGAGAACCTAATAATGATGATCTTACCCTGAAGTTATGGGAAACAGACAGCACAAGAATGCAATCTGGAAATGTATTCGCTCCTTGAGAAGGCATCATTGCCAGTGGAGCAGCTGATGATTGTATACGACTTTTTGTGGAGAATAATGATAGCCTGGTTGATGGCGGTCCTCTTTATAAATTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGATGTGAATTCAGTGCAATGGAGCCATGGGGTTAATGCACATCTTATGGCCAATAGAGCTTCCAAAATGCAAGGTATCAGTGTGCCTCAGGAGAAGCGGCTGCTAGCCTCTGCAAGCGATGATGGGACTATCAAGATGTGGGAGCTGCTATCACTGTGA 984 0.4543 MENFNEGFELKEFQTLEGHSDRVWSLAWNPATGHSGIPYVFASCSGDKTVRIWEQNLSTGLWGCKAVLEETHTRTVRSCAWSPSGKLLATSSFDATTAIWENVGGNFECVSTLEGHENEVKSVSWNASGSLLATCGRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVQWHPTMDILFSCSYDNKIKVWADEGDSDEWQCVQTLGEPNNDDLTLKLWETDSTRMQSGNVFAPXEGIIASGAADDCIRLFVENNDSLVDGGPLYKLLLKKEKAHDMDVNSVQWSHGVNAHLMANRASKMQGISVPQEKRLLASASDDGTIKMWELLSL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1657 327 Pfam WD domain, G-beta repeat 12 53 IPR001680 GO:0005515
Lele13g1657 327 Pfam WD domain, G-beta repeat 108 144 IPR001680 GO:0005515
Lele13g1657 327 Pfam WD domain, G-beta repeat 153 189 IPR001680 GO:0005515
Lele13g1657 327 Pfam WD domain, G-beta repeat 67 100 IPR001680 GO:0005515
Lele13g1657 327 Pfam WD domain, G-beta repeat 300 322 IPR001680 GO:0005515
Lele13g1657 327 ProSitePatterns Trp-Asp (WD) repeats signature. 132 146 IPR019775 -
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 327 IPR001680 GO:0005515
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 189 - -
Lele13g1657 327 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 8 326 IPR028608 GO:0016226|GO:0097361
Lele13g1657 327 SMART WD40_4 258 323 IPR001680 GO:0005515
Lele13g1657 327 SMART WD40_4 61 101 IPR001680 GO:0005515
Lele13g1657 327 SMART WD40_4 106 145 IPR001680 GO:0005515
Lele13g1657 327 SMART WD40_4 9 54 IPR001680 GO:0005515
Lele13g1657 327 SMART WD40_4 151 190 IPR001680 GO:0005515
Lele13g1657 327 CDD WD40 14 326 - -
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 154 IPR001680 GO:0005515
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 189 IPR001680 GO:0005515
Lele13g1657 327 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
Lele13g1657 327 SUPERFAMILY WD40 repeat-like 9 323 IPR036322 GO:0005515
Lele13g1657 327 PANTHER WD40 PROTEIN CIAO1 10 324 IPR028608 GO:0016226|GO:0097361
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 327 - -
Lele13g1657 327 Gene3D - 38 326 IPR015943 GO:0005515
Lele13g1657 327 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Lele13g1657 327 PRINTS G protein beta WD-40 repeat signature 41 55 IPR020472 -
Lele13g1657 327 PRINTS G protein beta WD-40 repeat signature 132 146 IPR020472 -
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 54 IPR001680 GO:0005515
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 101 - -
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 101 IPR001680 GO:0005515
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 54 - -
Lele13g1657 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1657 Lele-ChrLele13 25354918 25359195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1657 13 204 U-box Gene Family AT2G33340 24.786 4.91e-09 55.5