Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele13g1647 | ATGAGAAGCAGTGATTTTGAAGCCCAAAATCTAGAATCACAAGATAATCAGTGTGACCTTGAAAAACCTACGGATTCTGAAGAGAAGGTAGATTTTGATGGAGATAATGATCAAGGGGATACTGAGGAGGAAGAAGTTGAATATGAAGAAGTAGAGGAGGAGGAGGAAGTGGAAGGGGAAGAGGAAGATGAAGTGGAGGGGGTGGAGGAAGGGACTGAAGGGGCTGGCAATAGAAATGTTGCAGTCTCTGAGGATGAAGATGAGAAAAAGAAGCATGCAGAGCTTCTTGAACTTCCACCTCATGGTTCAATGGTTTACCTTGGTGGAATTCCTCACAATGCTTCTGAAGAGGATTTAAGGGGCTTCTGTCAATCTGTGGGAGATGTATTTGAGGTTAGGATTGTGAGGGGAAAAGAATCTGGTGAAGCGAAAGTTTATGCTTTTGTGACCTTCAAGACACAGGAGATGGCTTCTAAGGCTATTGAGAAGCTGAATAAGTCTAAATTTCAGGGAAATGAAATAAAATGCTCAGCATCTAAAGAAAAGCTTAGGTTGTTTATTGGTAATATACCTAGACATTGGACAGAGGAAGATTTGAGGAAGGCTGTTACAGTAATTGGGCCTGGAGTCAATTCTGTTGAACTGTTGAAGGAACTAAAGAATTCAGATCGTAATCGTGGATTTGCTTTCATTGAGTATTACAATCATGCATGTGCAGAATATTCAAGACAGAAGATGTCCAATCCAAAATTTAAGCTCGACAACAATTCTCCAACAGTGAAGTGGGCTGAACCTAAGAATGATGAATCATCTGCAGCCTCCCAGGTCAAGGCGGTGTATGTAAAGAATCTGCCAGAAAACATTACTCGGGATTGCCTTAAGGAGTTGTTTGAGCATCATGGAGAGATCACAAAAGTGGTAATCCCTCCTGCTAAAGCTGGACATGAAAAGAGCAGATTTGGTTTTGTTCACTTTGCTGAGAGGTCATCTGCCAGGAAGGCATTGGAGGATACCGAGAAATATGAAATTGACGGTCAAGTTTTGGAGTGTTCACTTGCAAAACCACAAGCAGATCAGAAGTCATCTAGGACACCATTTACACAAAACTCGATTGTACTCCCAACTTATCCACCTCAACTTGGTTATGGTTTGGTTGGAGGTGCCTATGGTGCTTTGGGTCCAAGATATGGTGCGGCTGACTTTACACGACCGTTAGTCTATGGTAGGGGAGCGGCTCCTGCTGGCATGGCAATGATGCCTGTGCTCTTACCTGATGGAAGGATCGGATATGTATTGCAACAGTCAGGATTGCAACAACATTCCCGTTCATCGACATCCCTTGGTGGCAGGAGAAGTGGCAGCTCCAGTGGTGGGAGGCACAATGATGATCAGAATAGGAGCCGATATCATCCCTACTAA | 1419 | 0.4355 | MRSSDFEAQNLESQDNQCDLEKPTDSEEKVDFDGDNDQGDTEEEEVEYEEVEEEEEVEGEEEDEVEGVEEGTEGAGNRNVAVSEDEDEKKKHAELLELPPHGSMVYLGGIPHNASEEDLRGFCQSVGDVFEVRIVRGKESGEAKVYAFVTFKTQEMASKAIEKLNKSKFQGNEIKCSASKEKLRLFIGNIPRHWTEEDLRKAVTVIGPGVNSVELLKELKNSDRNRGFAFIEYYNHACAEYSRQKMSNPKFKLDNNSPTVKWAEPKNDESSAASQVKAVYVKNLPENITRDCLKELFEHHGEITKVVIPPAKAGHEKSRFGFVHFAERSSARKALEDTEKYEIDGQVLECSLAKPQADQKSSRTPFTQNSIVLPTYPPQLGYGLVGGAYGALGPRYGAADFTRPLVYGRGAAPAGMAMMPVLLPDGRIGYVLQQSGLQQHSRSSTSLGGRRSGSSSGGRHNDDQNRSRYHPY | 472 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele13g1647 | 472 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 103 | 181 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 19 | 452 | - | - | |
| Lele13g1647 | 472 | Gene3D | - | 265 | 369 | IPR012677 | - | |
| Lele13g1647 | 472 | MobiDBLite | consensus disorder prediction | 30 | 70 | - | - | |
| Lele13g1647 | 472 | CDD | RRM_SF | 105 | 177 | - | - | |
| Lele13g1647 | 472 | SUPERFAMILY | RNA-binding domain, RBD | 274 | 363 | IPR035979 | GO:0003676 | |
| Lele13g1647 | 472 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 184 | 264 | - | - | |
| Lele13g1647 | 472 | SMART | rrm1_1 | 184 | 261 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | SMART | rrm1_1 | 104 | 177 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | SMART | rrm1_1 | 278 | 351 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | Coils | Coil | 43 | 63 | - | - | |
| Lele13g1647 | 472 | Gene3D | - | 184 | 264 | IPR012677 | - | |
| Lele13g1647 | 472 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 105 | 175 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 279 | 348 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 185 | 251 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Lele13g1647 | 472 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 183 | 265 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | MobiDBLite | consensus disorder prediction | 435 | 472 | - | - | |
| Lele13g1647 | 472 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 277 | 355 | IPR000504 | GO:0003723 | |
| Lele13g1647 | 472 | SUPERFAMILY | RNA-binding domain, RBD | 100 | 266 | IPR035979 | GO:0003676 | |
| Lele13g1647 | 472 | Gene3D | - | 21 | 183 | IPR012677 | - | |
| Lele13g1647 | 472 | MobiDBLite | consensus disorder prediction | 435 | 460 | - | - | |
| Lele13g1647 | 472 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele13g1647 | Lele-ChrLele13 | 25316255 | 25318974 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele13g1647 | 105 | 422 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.793 | 3.87e-15 | 75.9 |