Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele13g1634 | ATGGGACGCGTCCGCACCAAGACTGTCAAGAAATCTTCACGTCAGGTCATCGAGAAGTACTACTCTCGAATGACATTGGACTTCCACACCAACAAGAAGATTCTTGAGGAGGTTGCTCTCATTCCCTCTAAGAGACTCCGCAACAAGATTGCCGGATTCTCGACTCATCTCATGAAGAGGATCCAGAAGGGACCTGTTCGTGGAATTTCTCTCAAGCTTCAGGAGGAGGAGCGTGAGCGTCGCATGGATTTCGTCCCTGACGTTTCCGCCATTAAGACTGATCAGATCGAGGTCGATAAGGAGACTCTAGACATGCTCAATGCTCTTGGTATGAATGATATTCCGGGGCTTGTCCAAGTTGATCCTGTCCCTGTGCAGCAGACGTTGGGATTCGGTCGTGGTTTTGGCGGACCTAGGAGCCCGCTAATAAGTTTTGGGATGTTGCTTTTGCGTGTGTTCTTCAGTGAATTGACTGAATATGATACGCTGAGACTTTTGATGCAATAG | 507 | 0.4852 | MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLNALGMNDIPGLVQVDPVPVQQTLGFGRGFGGPRSPLISFGMLLLRVFFSELTEYDTLRLLMQ | 168 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele13g1634 | 168 | Pfam | Ribosomal S17 | 1 | 120 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele13g1634 | 168 | Gene3D | - | 1 | 62 | IPR036401 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele13g1634 | 168 | PANTHER | 40S RIBOSOMAL PROTEIN S17 | 1 | 125 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele13g1634 | 168 | FunFam | 40S ribosomal protein S17 | 1 | 62 | - | - | |
| Lele13g1634 | 168 | ProSitePatterns | Ribosomal protein S17e signature. | 41 | 56 | IPR018273 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele13g1634 | 168 | SUPERFAMILY | Rps17e-like | 1 | 62 | IPR036401 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele13g1634 | 168 | Hamap | 30S ribosomal protein S17e [rps17e]. | 1 | 63 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele13g1634 | Lele-ChrLele13 | 25222653 | 25223596 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele13g1634 | 1 | 141 | Cytoplasmic Ribosomal Protein Gene Family | AT5G04800 | 82.270 | 1.55e-80 | 233 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele13g1634 | 13 | 25222653 | 25223596 | Lele15g0782 | 15 | 4490636 | 4491537 | hybridization | |
| Lele13g1634 | 13 | 25222653 | 25223596 | Lele16g0793 | 16 | 4462957 | 4464461 | hybridization |