LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g1608	ATGAATGAATCGATGGAATTACCTCACTCGCGTTGGAAAGGTGATTTGAAAAGAGAGAAAGGGTCAAATCGAAAGATGTTGCCGTGTTTTGATCCTTTCACAGTTCAGAGAGATGATCATGAAGCACGTGTGCACTACTCTAATTTCCATCACACACCAGATTCTCTCGAAGTCCAAGTGAAGTCACCACCAAAGGAATTAGTCTCTCACCCAAAATCGATGGCGACGTACTTTCATGGTAATCCTGAAATCCAACCACCCGATGGCCTCCAAACTCTGGTTCTCATGAACCCCGGCTACATCCACTACTCCGACACGCCACCGCCACCGACACCGCACCCCAGCAACTTGGTCTTCCTCAACTCCATCGCAGCCGGCAACAACTCGCTCACTCCCCAAAACTTCCCCCACGTGCCGCCCAGTCACACCCAGCAATTCGTGGGCATCCCTCTGCCGACCGTCGCCGCCTCCTCCTCCCAGGATCCCAACCAGCAACACTCCGTGCACGCTCATCAAGATGCCTCCACCTTGCATGGATTCGTGCCTCGCATGCAGTGCAATCTCTGGAACCCAATCGACCCAAACGCGACGGCGCGTGAGACTCCACGAGCACAGCAGGGACTGTCGCTTAGCCTGTCCTCCCAGCAAGCTGGAATGGGTTCTTTCCGTGTTGATCGCGACGTGACATCGCTGGGTCAAGCGCCTGCTATGTCTGGCGAAGACGTTCGCGGGTCGGGTGGGTCGCCGTCTTCGGCTTCTGTGGTGACCAACGTGAACGGTGTTTCGGGGATTCAGAGCGTGTTTCTAAGCTTCAAGTACGTGAAAGCGGCACAGGAACTTCTCGACGAGGCCGTCAACATTAACAACGGCATCAAAACTGAACTGGGAAAGAAGAGCGGTGGGACCCATACTAAAGCCACTGGGGAGACATCCGGAACAGCAGCAAGTGGCGACGGCTCTGTCGGCGGAGAAGGAAAAGCTAAGCTTGCCTCTGATCTATCGGCTGCGGAGAGACAAGAAATCCAGATGAAGAAGGCTAAGCTAATCAGCATGCTCGATGAGGTGGAGCAGAGGTACAGCCAGTACCACGAGCAGATGCAGATGGTGATTTCGTCATTCGAGCAAGCTGCGAGAATTGGATCAGCCCAAACATACACAGCCCTTGCGCTGCAAACAATCTCGAAGCAGTTTCGGTGCTTGAAGGATGCCATAACAGCCCAAATTCGGGCTGCTAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAACCAAGATTGAAGGTTCGAGGCTCAAGTACGTGGACCATCACCTGCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACGTATGCTTGCTAAGCAGGCAGGCCTCACTAGGAGCCAGGTTTCGAATTGGTTCATAAATGCTCGAGTTCGGCTCTGGAAACCAATGGTGGAAGATATGTACATGGAGGAGATGAAGGAGCAAGAACAGAATGGATCTGAAGATAAATCAAGCAAGAGCGGTGAAGATCCAGCTATTAAAACTGCAGCTCCACAACAAAAAGGCCCTGCCACTGAAACGGACGCTAGAAGCCTCAACTCCAACCAAGACAAGCCTTCAAACCACAATAACACTCCTTCTGTTTCAGTTTCTAAACCATTGATATCATCACCGACTGGGGATGATAATGTCAGAAACCGGTTTGGGTTCAGCTTCATGGGATCATCAGAGCTAGAAGGGATCACGCAAGCAAGTCCCAAGAAACCACGAAACCAGGAAATTCTACACTTCCCAACTTCAATAAACATGGACGTGAAGCCCAATGAGGCCAACAATGAGCAACATTCAATAAAATTTGGAGAGGATGAGAGGCAGGGGAGGGATGAATACTCATTCATGGGAAACCAATCGAACTTTATCGGAGGCTTTGGACAATACCCAATTGGTGAGATTGGAAGGTTTGACGCAGAGCAGTTTACTCCAAGGTTTTCCGGTAATGGGGTTTCCCTGACTCTTGGTCTTCCCCACTGCGACACGTTGTCAGGAAGCCATCAAACTTTTCTGCCAAACCAGAACATTCAATTGGGAAGAAGACTGGAGATGGGTGAATCAAACGAGTACGGAGCCATAAACCCTTCCACTACTCACTCATCAGCTGCATTTGAGAACATGAACATGCAGAACCCAAAGAGGTTCGCTGCACAGTTGTTGCCAGACTTTGTCACCTAA	2325	0.5058	MNESMELPHSRWKGDLKREKGSNRKMLPCFDPFTVQRDDHEARVHYSNFHHTPDSLEVQVKSPPKELVSHPKSMATYFHGNPEIQPPDGLQTLVLMNPGYIHYSDTPPPPTPHPSNLVFLNSIAAGNNSLTPQNFPHVPPSHTQQFVGIPLPTVAASSSQDPNQQHSVHAHQDASTLHGFVPRMQCNLWNPIDPNATARETPRAQQGLSLSLSSQQAGMGSFRVDRDVTSLGQAPAMSGEDVRGSGGSPSSASVVTNVNGVSGIQSVFLSFKYVKAAQELLDEAVNINNGIKTELGKKSGGTHTKATGETSGTAASGDGSVGGEGKAKLASDLSAAERQEIQMKKAKLISMLDEVEQRYSQYHEQMQMVISSFEQAARIGSAQTYTALALQTISKQFRCLKDAITAQIRAANKSLGEEDCFGTKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKRMLAKQAGLTRSQVSNWFINARVRLWKPMVEDMYMEEMKEQEQNGSEDKSSKSGEDPAIKTAAPQQKGPATETDARSLNSNQDKPSNHNNTPSVSVSKPLISSPTGDDNVRNRFGFSFMGSSELEGITQASPKKPRNQEILHFPTSINMDVKPNEANNEQHSIKFGEDERQGRDEYSFMGNQSNFIGGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCDTLSGSHQTFLPNQNIQLGRRLEMGESNEYGAINPSTTHSSAAFENMNMQNPKRFAAQLLPDFVT	774

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g1608	774	MobiDBLite	consensus disorder prediction	552	596	-	-
	Lele13g1608	774	MobiDBLite	consensus disorder prediction	524	541	-	-
	Lele13g1608	774	MobiDBLite	consensus disorder prediction	293	326	-	-
	Lele13g1608	774	MobiDBLite	consensus disorder prediction	193	214	-	-
	Lele13g1608	774	SUPERFAMILY	Homeodomain-like	455	521	IPR009057	-
	Lele13g1608	774	CDD	homeodomain	454	515	IPR001356	GO:0003677
	Lele13g1608	774	MobiDBLite	consensus disorder prediction	524	600	-	-
	Lele13g1608	774	Pfam	Associated with HOX	271	405	IPR006563	-
	Lele13g1608	774	MobiDBLite	consensus disorder prediction	303	317	-	-
	Lele13g1608	774	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele13g1608	774	SMART	prehox3	262	406	IPR006563	-
	Lele13g1608	774	ProSiteProfiles	'Homeobox' domain profile.	451	514	IPR001356	GO:0003677
	Lele13g1608	774	Gene3D	-	457	536	-	-
	Lele13g1608	774	Coils	Coil	338	365	-	-
	Lele13g1608	774	SMART	HOX_1	454	518	IPR001356	GO:0003677
	Lele13g1608	774	Pfam	Homeobox KN domain	471	510	IPR008422	GO:0003677\|GO:0006355
	Lele13g1608	774	FunFam	BEL1-like homeodomain protein 9	457	519	-	-
	Lele13g1608	774	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	162	538	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g1608	Lele-ChrLele13	25053519	25058631	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g1608	74	773	Homeobox Transcription Factor Family	AT2G35940	49.535	1.68e-172	510

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele13g1608		POX	2.6e-45	No_clan