Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1603 ATGAATGACTTGTTCTCCGGCTCATTCTCTCGCCTCCGCCCCGACCAGGCATCGCCGGCCCATCATGTCATCGAGATGGCGCCCACTACGCCCACCGGCGGTGTCAACCTCGACAAGTTCTTCGACAACGCGGATTCGATCAAGGACGAACTCAAGGAGCTGGATCGCCTCAACCAGAACCTCCAGAGCTCTCACGAGCAGAGCAAGACCCTTCACAATGCAAAGGCCGTCAAGGACCTCCGGTCTCGCATGGACGGCGATGTTGCGCTTGCTCTGAAGAAGGCCAAGCTCATCAAGGTCAAGCTGGAGGCTCTGGAGCGATCCAACGCGGCCAACCGTAGCTTGCCGGGTTGCGGGCCAGGATCATCGTCGGACCGGACCCGCACCTCTGTGGTCAACGGGTTGAAAAAGAAGCTGAAGGACTCCATGGAGAGCTTCAATAACCTCAGGCAGCAGATCTCATCGGAATACCGCGAGACTGTACAACGGAGGTATTTCACGGTCACCGGCGAGAACCCCGACGAGAAGACCGTCGACCTCTTGATCTCTACAGGTGAGAGTGAGACGTTCCTTCAGAAAGCCATCCAAGAACAGGGTAGAGGCAGGATTATGGATACCATCAATGAGATTCAAGAGAGGCATGATGCTGTGAAAGGGATAGAGAAGAATCTGAAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGCTGGTGGAATCTCAAGGGGAGCAATTGGATAACATAGAGAGCCACGTGGCGAGAGCTCAATCGTTTGTGAGGAGTGGAGCTGAGCAGTTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATGCTATCACGATTCTCCTAGTAATCATCTTGTTTGTGGTTCTCTTCACTGTTAGACCATGGGAAAACAACGGTGGGGGTGGGGGAGGGGGTGGTGGCAATCAGCCAGCTTCACCCCAAACACCTCCTCCGCCTCCGCCTGCTAGAAGATAG 996 0.5442 MNDLFSGSFSRLRPDQASPAHHVIEMAPTTPTGGVNLDKFFDNADSIKDELKELDRLNQNLQSSHEQSKTLHNAKAVKDLRSRMDGDVALALKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLQKAIQEQGRGRIMDTINEIQERHDAVKGIEKNLKELHQVFLDMAVLVESQGEQLDNIESHVARAQSFVRSGAEQLQTARKHQKNTRKWTCYAITILLVIILFVVLFTVRPWENNGGGGGGGGGNQPASPQTPPPPPPARR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1603 331 CDD SNARE_syntaxin1-like 206 268 - -
Lele13g1603 331 PANTHER SYNTAXIN 59 291 IPR045242 -
Lele13g1603 331 CDD SynN 37 194 IPR006011 GO:0016020
Lele13g1603 331 FunFam Syntaxin 132 200 300 - -
Lele13g1603 331 SMART SynN_4 32 158 IPR006011 GO:0016020
Lele13g1603 331 Gene3D - 35 167 - -
Lele13g1603 331 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Lele13g1603 331 Gene3D - 202 300 - -
Lele13g1603 331 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Lele13g1603 331 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
Lele13g1603 331 MobiDBLite consensus disorder prediction 306 331 - -
Lele13g1603 331 Coils Coil 329 331 - -
Lele13g1603 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Lele13g1603 331 SMART tSNARE_6 202 269 IPR000727 -
Lele13g1603 331 Pfam SNARE domain 243 295 IPR000727 -
Lele13g1603 331 Coils Coil 132 156 - -
Lele13g1603 331 Coils Coil 37 67 - -
Lele13g1603 331 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1603 Lele-ChrLele13 25011001 25012506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1603 28 331 SNARE and Associated Proteins AT3G11820 76.774 5.43e-160 448