Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1601 ATGAAGACTCATAGCTCCATCATCTCATCATCAGTTCTCGAACCAGCTTTTCTAGTTGAGAAAATTTGGCCACATAGGTTCACTGCGCGAAAGCATTTTGCTCGTGGGCGATTTCCCTCTGTATTTCCCCTTTACACTTTACTCCTCTCTATCTCTGTCTCTCTCCCTCCACTTTCAGGGTCTCTGCCTTATTTCATATTGTACCGAGAAACAATTCATATGGCCATGCAAACTTCTTATTTCAAAGAACATGAAGGACTTGTCCACAATGCCATTGGGCAATTGTCATCTGTAACCTCAGCCCCCTGGTGGACTTCCATTGGATCTCAAACAGTTCAACATGAGTCTTTTGGTCAGATGAGACCTTTTTCACTGGACTTTCCCAACTATGTCGACCATCTTACCTGCCCGAAACAGCCAGGAAAAGCAGCTCATCAGGTTTCGGATAAAGGACACACAACACAGTTCACTATCTTCCCAGAAGATTGCGAGATGTCAGATGATACACAAAAGCATCAGGTTGTCATGTCACTTCATTCATCCTCTCCTGAACCTCGTGGTCACTTTGAGATAAAATTTAGTCAGCCTATGATCTGTTCAAAATATCCTTATATGGATCGATTTTATGGGCTTATCTCAGCCTATGGACCTCAGATTCCGGGCCGTTTAATGCTGCCACTTAACTTGACATCCGATGATGGGCCAATTTATGTAAATGCTAAGCAGTATCATGGGATCATCAGACGTCGGCAGTCACGTGCAAAGGCTTTACTTGAGAATAAATTCACAAAACGCCGCCGGCCCTATATGCATGAATCACGTCACCTGCATGCAATGAGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAGAAATCTGAAGCGTGGAAATGGTGAAAGAGGCAGCACGGCAATCAAAACTGGGGAGGGTCTATTCCAATCTAGTGGTTCTCAGAGTTCTGAAGTTCCTCAATCAGAGGGTAATGGAACTCTGAATTCATCAAAGGAAACCAATGGCAGCAGTTCAAATGTTTCAGGCTTCGATGTGACTAGCATGTATGCCGCACGTGGAACTTTCGATAGCTTTGGTCTCAATCATGTGGGGTCCACTGTGCACTCTCTTGCAGACATGATAGATCATAGCGGACGTGGCATTGCCATGCCTGCGAAATGGGTTGCAGCAGCAGGTAACTGCTGCAAACTCTAA 1212 0.453 MKTHSSIISSSVLEPAFLVEKIWPHRFTARKHFARGRFPSVFPLYTLLLSISVSLPPLSGSLPYFILYRETIHMAMQTSYFKEHEGLVHNAIGQLSSVTSAPWWTSIGSQTVQHESFGQMRPFSLDFPNYVDHLTCPKQPGKAAHQVSDKGHTTQFTIFPEDCEMSDDTQKHQVVMSLHSSSPEPRGHFEIKFSQPMICSKYPYMDRFYGLISAYGPQIPGRLMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKALLENKFTKRRRPYMHESRHLHAMRRPRGCGGRFLNTRNLKRGNGERGSTAIKTGEGLFQSSGSQSSEVPQSEGNGTLNSSKETNGSSSNVSGFDVTSMYAARGTFDSFGLNHVGSTVHSLADMIDHSGRGIAMPAKWVAAAGNCCKL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1601 403 MobiDBLite consensus disorder prediction 281 346 - -
Lele13g1601 403 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 235 289 IPR001289 GO:0003700|GO:0006355
Lele13g1601 403 ProSiteProfiles NF-YA/HAP2 family profile. 232 292 IPR001289 GO:0003700|GO:0006355
Lele13g1601 403 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 135 352 IPR001289 GO:0003700|GO:0006355
Lele13g1601 403 PRINTS CCAAT-binding transcription factor subunit B signature 266 289 IPR001289 GO:0003700|GO:0006355
Lele13g1601 403 PRINTS CCAAT-binding transcription factor subunit B signature 235 257 IPR001289 GO:0003700|GO:0006355
Lele13g1601 403 SMART cbf3 231 292 IPR001289 GO:0003700|GO:0006355
Lele13g1601 403 Gene3D - 233 293 - -
Lele13g1601 403 MobiDBLite consensus disorder prediction 309 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1601 Lele-ChrLele13 25001079 25006786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1601 64 403 CCAAT-HAP2 Transcription Factor Family AT3G05690 40.556 5.68e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele13g1601 CBFB_NFYA 2.2e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0858 06 5338083 5339472 Lele13g1601 13 25001079 25006786 CCT
Lele07g1036 07 6241805 6243300 Lele13g1601 13 25001079 25006786 CCT
Lele08g0848 08 5340814 5346927 Lele13g1601 13 25001079 25006786 CCT
Lele13g1601 13 25001079 25006786 Lele15g0815 15 4713068 4718904 hybridization
Lele13g1601 13 25001079 25006786 Lele16g0835 16 4669477 4672659 hybridization