Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1581 ATGGCTTCTAGATTCTGGACACAGGGTGCCAGTGACTCCGAGGAGGAGGAGAGTGACTATGATGAAGATGTTGAGAATGTAGTGGGTGAATCTACCAATCAAGCTGTTCAAAGCAGATACTTGCAGGGTAACGCCAGTGATAGTGATGATTCTGATGATCAGAAGCGTGTTGTTAGGTCAGCAAAAGACAAGCGATTTGAAGAGATGTCATCTACAATTGGCCAGATGAAGAATGCTATGAATATTAATGACTGGGTGAGCTTGCAAGAGACCTTTGATAAGATAAACAAGCAGCTTGAGAAAGTCATGCGTATCACTGAATCTGAGAAGGTGCCTACTCTTTACATAAAGGCACTTGTGATGTTGGAAGACTTCCTGGCACAGGCATTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGTAGTAATGCTAAAGCATTGAACTCAATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAGGATTTGATTACTAAATATAGAGAAAATCCTGAGAGTGAGGAGGACAAAGATGAAGAGGAGACCGAGGATGATGATGAAAGTGAGGAGGAGGTAATTGAGGAGATTGATAAGATACAAAAGTCTGATTCTGAAGATGGCGATCAAGATGATGAGAAGTCAGATGCAATTGATACCCCTTGGGACCAAAAACTTAGCAAGAAAGACAGGCTTATGGATAGGCAATTTATGAAAGACCCTAGTGAGATCTCATGGGACATGGTTAACAAGAAGTTCAAAGAAGTTGTGGCAGCTAGGGGCAGGAGGGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTGCCTTTTTAACAAAAGTTGCGAAAACACCTGCACAGAAGCTGGAAATATTTTTCAGTGTTGTTTCTGCTCAATTTGATGTTAATCCTGGTTTAAATGGGCACATGCCTATTAATGTGTGGAAGAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTTGTGCAGTACCCAAACATAATTGTTGATGATACAGTGGAGCCTGATGAGAATGAAACTCAAAAGGGCCCTGACCATAGTGGACCAATTCGGGTATGGGGCAACTTAGTTGCATTCCTAGAAAGAATTGATGCTGAGTTTTTCAAGAGCTTGCAATGCATTGACCCTCATACTCGTGAGTATGTTGAGAGACTCAAGGATGAGCCCATGTTTCTGGCTCTTGCTCAGAATGTCCAGGATTATCTTGAAAGGGCTGGAGATTTCAAAGCTTCATCAAAGGTAGCCCTTAGACGTGTTGAACTCATCTATTACAAACCACAGGAGGTTTATGATGCCATGAGGAAATTGGCTGAACTGACAGATGACAATAATGGAGAGGTGGATGACGAGTCTAAAGGGTTTGAGGATACAAGGACTCCTACCGCATTTGTTGTAACTCCTGAGCTTGTTCCTCGAAAACCTACCTTCCCAGAGAATAGTAGGACACTGATGGACTTATTGGTGTCCCTGATATACAAGTATGGGGATGAGCGGACAAAGGCACGTGCTATGCTTTGTGATATATATCACCATGCTCTTCGGGATGAGTTCTCAACTGCCCGTGATCTTCTGCTTATGAGCCATTTGCAGGATAGTGTTCACCATATGGACATATCGACACAGATACTTTTTAACAGGGCTATGTCACAGCTAGGTCTTTGTGGTTTTCGGGTTGGACTGATTTCTGAGGCTCATGGCTGTCTCTCTGAATTATATTCTGGTGGAAGGGTGAAGGAGCTGCTTGCTCAAGGTGTCTCACAAAGTCGTTATCATGAGAAGACTCCAGAGCAGGAAAGGTTGGAAAGGAGACGTCAGATGCCATATCATATGCACATTAACCTTGAGCTCCTGGAGTCAGTGCATCTTATATGTGCTATGCTTCTGGAAGTTCCTAACATTGCAGCTAATGACCATGATGCCAAGCGCAAAGTTATTAGCAAGACTTTCCGTCGCTTGCTTGAGGTCAGTGATAAGCAAACATTTACCGGTCCACCTGAAAATGTCAGAGATCATGTCATGGCTGCTACTAGGGCCCTGAGCAAGGGAGATTTCCATAAGAGTTATGATATCATCAAGTCGTTGGATGTCTGGAAATTTGTTAGAAATCATGACAAGGTGCTGGAAATGCTCAAGGAAAAAATCAAGGAGGAGGCACTAAGGACTTACCTCTTTACCTTCTCTTCATCCTATGACTCTTTGAGCCTTGAGCAACTCACAAAAATGTTTGACCTCTCTGTTCCTCACACCCATAGCATAGTTAGTAGGATGATGATAAATGAGGAGCTGCATGCAAGCTGGGACCAACCAACTGGCTGCATTATTTTCCAGGATGTAAAGCACTCTAGATTGCAGGCTTTGGCATTCCAGTTGACGGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCAATAGAGGCAAGGATAGGTGGTGGTGGATTGGATCTTCCCCTAAGGCGACGAGATAGCCAGGACTATGCTGCTGCTGCTGCAGCACCAACTACTGGTGGTGGTAGGTGGCAAGACTTGTCAGTTGGTCAGACAAGGCAAGGCAGTGGTACTGGACGAGCAGGATATAGTATCGGTGGCGGAAGGCCATTAACATTGAGCCAAAATGGATATTCAAGGGACCGAACAGGAAGAGGAGCAGGTGGAGGCTATCAGAGTACGAGATATCAAGACTCTGCATATGGTGGTTCAGGGAGGTCAACTCAGGGTTTAGCACACAGGGGAGCCCAGGTGGATGCATCTACTCGTATGGTTAGCCTTAAAGGTGCTCGGGCTTGA 2808 0.4416 MASRFWTQGASDSEEEESDYDEDVENVVGESTNQAVQSRYLQGNASDSDDSDDQKRVVRSAKDKRFEEMSSTIGQMKNAMNINDWVSLQETFDKINKQLEKVMRITESEKVPTLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLITKYRENPESEEDKDEEETEDDDESEEEVIEEIDKIQKSDSEDGDQDDEKSDAIDTPWDQKLSKKDRLMDRQFMKDPSEISWDMVNKKFKEVVAARGRRGTGRFEQVEQLAFLTKVAKTPAQKLEIFFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQYPNIIVDDTVEPDENETQKGPDHSGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLKDEPMFLALAQNVQDYLERAGDFKASSKVALRRVELIYYKPQEVYDAMRKLAELTDDNNGEVDDESKGFEDTRTPTAFVVTPELVPRKPTFPENSRTLMDLLVSLIYKYGDERTKARAMLCDIYHHALRDEFSTARDLLLMSHLQDSVHHMDISTQILFNRAMSQLGLCGFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNIAANDHDAKRKVISKTFRRLLEVSDKQTFTGPPENVRDHVMAATRALSKGDFHKSYDIIKSLDVWKFVRNHDKVLEMLKEKIKEEALRTYLFTFSSSYDSLSLEQLTKMFDLSVPHTHSIVSRMMINEELHASWDQPTGCIIFQDVKHSRLQALAFQLTEKLSILAESNERAIEARIGGGGLDLPLRRRDSQDYAAAAAAPTTGGGRWQDLSVGQTRQGSGTGRAGYSIGGGRPLTLSQNGYSRDRTGRGAGGGYQSTRYQDSAYGGSGRSTQGLAHRGAQVDASTRMVSLKGARA 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1581 935 SUPERFAMILY "Winged helix" DNA-binding domain 712 787 IPR036390 -
Lele13g1581 935 MobiDBLite consensus disorder prediction 27 45 - -
Lele13g1581 935 Pfam PCI domain 655 783 IPR000717 -
Lele13g1581 935 MobiDBLite consensus disorder prediction 847 862 - -
Lele13g1581 935 MobiDBLite consensus disorder prediction 12 26 - -
Lele13g1581 935 Gene3D - 717 791 IPR036388 -
Lele13g1581 935 MobiDBLite consensus disorder prediction 1 64 - -
Lele13g1581 935 MobiDBLite consensus disorder prediction 135 153 - -
Lele13g1581 935 SMART PINT_4 716 804 IPR000717 -
Lele13g1581 935 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 865 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele13g1581 935 MobiDBLite consensus disorder prediction 893 918 - -
Lele13g1581 935 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 647 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele13g1581 935 Coils Coil 144 171 - -
Lele13g1581 935 MobiDBLite consensus disorder prediction 175 194 - -
Lele13g1581 935 ProSiteProfiles PCI domain profile. 615 787 IPR000717 -
Lele13g1581 935 MobiDBLite consensus disorder prediction 167 225 - -
Lele13g1581 935 MobiDBLite consensus disorder prediction 134 153 - -
Lele13g1581 935 MobiDBLite consensus disorder prediction 46 64 - -
Lele13g1581 935 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele13g1581 935 MobiDBLite consensus disorder prediction 838 921 - -
Lele13g1581 935 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 716 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1581 Lele-ChrLele13 24861375 24864912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1581 1 935 Eukaryotic Initiation Factors Gene Family AT3G56150 67.516 0.0 1211